PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015896331.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRF

Protein Properties

Length: 437aa MW: 48132.6 Da PI: 7.5437

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015896331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.2	1.4e-23	151	195	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCsr+v++ +k+CErH h++r rsrk++e+ XP_015896331.1 151 DPEPWRCRRTDGKKWRCSRDVVPHQKYCERHSHKSRPRSRKPVES 195 79****************************************986 PP
2	QLQ	38.6	3.3e-14	90	120	4	34
QLQ 4 TaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 + aQ q+L++Q ++yKy+ ++PvPp+Ll + XP_015896331.1 90 SEAQRQELERQTMIYKYMTTSVPVPPQLLIP 120 679*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.1E-4	87	123	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	14.653	88	123	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.1E-9	90	120	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.97	151	195	IPR014977	WRC domain
Pfam	PF08879	3.2E-19	152	194	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MQPNKSFNRN YTMMPCHHQN LPTAGTAEFG LQGCCNGNGD CGPLFFDTSN QLSNSSSITH 60 NINDVVGAGN VLPKTQLHHP NSDIFSFNSS EAQRQELERQ TMIYKYMTTS VPVPPQLLIP 120 TITKTPKSFA RMHYSNQVKG SLELGISNSS DPEPWRCRRT DGKKWRCSRD VVPHQKYCER 180 HSHKSRPRSR KPVESQLPPP HFRNIGNNQN SSTIPYTTKP LFANHQSPSP PPFSTSMASS 240 TFLHDQTRCL EWFMKGETEA VVDGSNQDWL KAGLRLDNVN HDCDATMDIS EHQYEHTHHR 300 LNDQCSLLLA PKLTPFQEAP NSSGQAQETR HFIDAWSAAA EREQIGEFGN RCSVSSNDKV 360 PVSSLSLSMS GGNGRCAEEN ENAKMGAIGD MKSQWIMNPV SWLGSPPGGP LAEALCLGVA 420 GSSGCNSGGT ISSRSSS

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MQPNKSFNRN YTMMPCHHQN LPTAGTAEFG LQGCCNGNGD CGPLFFDTSN QLSNSSSITH  60
NINDVVGAGN VLPKTQLHHP NSDIFSFNSS EAQRQELERQ TMIYKYMTTS VPVPPQLLIP  120
TITKTPKSFA RMHYSNQVKG SLELGISNSS DPEPWRCRRT DGKKWRCSRD VVPHQKYCER  180
HSHKSRPRSR KPVESQLPPP HFRNIGNNQN SSTIPYTTKP LFANHQSPSP PPFSTSMASS  240
TFLHDQTRCL EWFMKGETEA VVDGSNQDWL KAGLRLDNVN HDCDATMDIS EHQYEHTHHR  300
LNDQCSLLLA PKLTPFQEAP NSSGQAQETR HFIDAWSAAA EREQIGEFGN RCSVSSNDKV  360
PVSSLSLSMS GGNGRCAEEN ENAKMGAIGD MKSQWIMNPV SWLGSPPGGP LAEALCLGVA  420
GSSGCNSGGT ISSRSSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015896331.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015896331.1	0.0	growth-regulating factor 8-like isoform X4
TrEMBL	M5WG20	1e-106	M5WG20_PRUPE; Uncharacterized protein
STRING	XP_008239263.1	1e-108	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	1e-35	growth-regulating factor 8