PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896330.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 449aa    MW: 49304 Da    PI: 7.5306
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.21.5e-23163207145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+ep+rCrRtDGKkWRCsr+v++ +k+CErH h++r rsrk++e+
  XP_015896330.1 163 DPEPWRCRRTDGKKWRCSRDVVPHQKYCERHSHKSRPRSRKPVES 207
                     79****************************************986 PP
2QLQ44.54.9e-16106138234
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                      FT aQ q+L++Q ++yKy+  ++PvPp+Ll +
  XP_015896330.1 106 FFTEAQRQELERQTMIYKYMTTSVPVPPQLLIP 138
                     6*****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.8E-8105141IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.164106141IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.9E-11107138IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.97163207IPR014977WRC domain
PfamPF088793.3E-19164206IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MQPNKSFNRN YTMMPCHHQN LPTAGTAEFG LQGCCNGNGD CGPLFFDTSN QLSNSSSITH  60
NINDVVGAGN VLPKTQLHHP NSDIFSFNSS AWWVTGGGIV NVRAPFFTEA QRQELERQTM  120
IYKYMTTSVP VPPQLLIPTI TKTPKSFAQV KGSLELGISN SSDPEPWRCR RTDGKKWRCS  180
RDVVPHQKYC ERHSHKSRPR SRKPVESQLP PPHFRNIGNN QNSSTIPYTT KPLFANHQSP  240
SPPPFSTSMA SSTFLHDQTR CLEWFMKGET EAVVDGSNQD WLKAGLRLDN VNHDCDATMD  300
ISEHQYEHTH HRLNDQCSLL LAPKLTPFQE APNSSGQAQE TRHFIDAWSA AAEREQIGEF  360
GNRCSVSSND KVPVSSLSLS MSGGNGRCAE ENENAKMGAI GDMKSQWIMN PVSWLGSPPG  420
GPLAEALCLG VAGSSGCNSG GTISSRSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896330.10.0growth-regulating factor 8-like isoform X3
TrEMBLM5WG201e-109M5WG20_PRUPE; Uncharacterized protein
STRINGXP_008239263.11e-111(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-35growth-regulating factor 8