PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015896329.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRF

Protein Properties

Length: 450aa MW: 49449.1 Da PI: 7.701

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015896329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.2	1.5e-23	164	208	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCsr+v++ +k+CErH h++r rsrk++e+ XP_015896329.1 164 DPEPWRCRRTDGKKWRCSRDVVPHQKYCERHSHKSRPRSRKPVES 208 79****************************************986 PP
2	QLQ	44.4	4.9e-16	101	133	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 FT aQ q+L++Q ++yKy+ ++PvPp+Ll + XP_015896329.1 101 FFTEAQRQELERQTMIYKYMTTSVPVPPQLLIP 133 6*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	9.8E-8	100	136	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.164	101	136	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.9E-11	102	133	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.97	164	208	IPR014977	WRC domain
Pfam	PF08879	3.3E-19	165	207	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MQPNKSFNRN YTMMPCHHQN LPTAGTAEFG LQGCCNGNGD CGPLFFDTSN QLSNSSSITH 60 NINDVVGAGN VLPKTQLHHP NSDIFSFNSS GGGIVNVRAP FFTEAQRQEL ERQTMIYKYM 120 TTSVPVPPQL LIPTITKTPK SFARMHYSNQ VKGSLELGIS NSSDPEPWRC RRTDGKKWRC 180 SRDVVPHQKY CERHSHKSRP RSRKPVESQL PPPHFRNIGN NQNSSTIPYT TKPLFANHQS 240 PSPPPFSTSM ASSTFLHDQT RCLEWFMKGE TEAVVDGSNQ DWLKAGLRLD NVNHDCDATM 300 DISEHQYEHT HHRLNDQCSL LLAPKLTPFQ EAPNSSGQAQ ETRHFIDAWS AAAEREQIGE 360 FGNRCSVSSN DKVPVSSLSL SMSGGNGRCA EENENAKMGA IGDMKSQWIM NPVSWLGSPP 420 GGPLAEALCL GVAGSSGCNS GGTISSRSSS

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MQPNKSFNRN YTMMPCHHQN LPTAGTAEFG LQGCCNGNGD CGPLFFDTSN QLSNSSSITH  60
NINDVVGAGN VLPKTQLHHP NSDIFSFNSS GGGIVNVRAP FFTEAQRQEL ERQTMIYKYM  120
TTSVPVPPQL LIPTITKTPK SFARMHYSNQ VKGSLELGIS NSSDPEPWRC RRTDGKKWRC  180
SRDVVPHQKY CERHSHKSRP RSRKPVESQL PPPHFRNIGN NQNSSTIPYT TKPLFANHQS  240
PSPPPFSTSM ASSTFLHDQT RCLEWFMKGE TEAVVDGSNQ DWLKAGLRLD NVNHDCDATM  300
DISEHQYEHT HHRLNDQCSL LLAPKLTPFQ EAPNSSGQAQ ETRHFIDAWS AAAEREQIGE  360
FGNRCSVSSN DKVPVSSLSL SMSGGNGRCA EENENAKMGA IGDMKSQWIM NPVSWLGSPP  420
GGPLAEALCL GVAGSSGCNS GGTISSRSSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015896329.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015896329.1	0.0	growth-regulating factor 8-like isoform X2
TrEMBL	M5WG20	1e-113	M5WG20_PRUPE; Uncharacterized protein
STRING	XP_008239263.1	1e-115	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-36	growth-regulating factor 8