PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896328.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRF
Protein Properties Length: 455aa    MW: 50092.8 Da    PI: 7.701
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-23169213145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+ep+rCrRtDGKkWRCsr+v++ +k+CErH h++r rsrk++e+
  XP_015896328.1 169 DPEPWRCRRTDGKKWRCSRDVVPHQKYCERHSHKSRPRSRKPVES 213
                     79****************************************986 PP
2QLQ44.45e-16106138234
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                      FT aQ q+L++Q ++yKy+  ++PvPp+Ll +
  XP_015896328.1 106 FFTEAQRQELERQTMIYKYMTTSVPVPPQLLIP 138
                     6*****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.8E-8105141IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.164106141IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.0E-11107138IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.97169213IPR014977WRC domain
PfamPF088793.4E-19170212IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQPNKSFNRN YTMMPCHHQN LPTAGTAEFG LQGCCNGNGD CGPLFFDTSN QLSNSSSITH  60
NINDVVGAGN VLPKTQLHHP NSDIFSFNSS AWWVTGGGIV NVRAPFFTEA QRQELERQTM  120
IYKYMTTSVP VPPQLLIPTI TKTPKSFARM HYSNQVKGSL ELGISNSSDP EPWRCRRTDG  180
KKWRCSRDVV PHQKYCERHS HKSRPRSRKP VESQLPPPHF RNIGNNQNSS TIPYTTKPLF  240
ANHQSPSPPP FSTSMASSTF LHDQTRCLEW FMKGETEAVV DGSNQDWLKA GLRLDNVNHD  300
CDATMDISEH QYEHTHHRLN DQCSLLLAPK LTPFQEAPNS SGQAQETRHF IDAWSAAAER  360
EQIGEFGNRC SVSSNDKVPV SSLSLSMSGG NGRCAEENEN AKMGAIGDMK SQWIMNPVSW  420
LGSPPGGPLA EALCLGVAGS SGCNSGGTIS SRSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896328.10.0growth-regulating factor 8-like isoform X1
TrEMBLM5WG201e-111M5WG20_PRUPE; Uncharacterized protein
STRINGXP_008239263.11e-113(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.17e-36growth-regulating factor 8