PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896272.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 676aa    MW: 75111.6 Da    PI: 5.7052
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4256.2e-1302926601373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL++c ea+ s++  l+++++a+l elasp+g +p+ Rl+ay+teALa r++r +++++++ +p+e ++   +++ +al+l+++vsPilkf 
  XP_015896272.1 292 LVSLLTSCLEAIGSKNIPLVNHFIAKLGELASPRGgTPLSRLIAYYTEALALRVTRLWPHIFHITTPREFDR-MDDDSGSALRLLNQVSPILKFL 385
                     6899******************************999*********************************85.56778899************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee.lgvpfefnvlvakrled 188
                     h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAee l++pfef++ v++rled
  XP_015896272.1 386 HFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEEaLNLPFEFHP-VVDRLED 475
                     *******************************************************....****************8549********.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l++L+vk++E++aVn+v+qlh++l +  +  s  +++L l++s++P++v ++eqea+hn++++ +r++++l+yysa+fds++ +lp +s +ri
  XP_015896272.1 476 VRLWMLHVKEHESVAVNCVFQLHKTLYDG-NGGS-LRDFLGLIRSTNPTIVLMAEQEAEHNDPRLEARVSNSLKYYSAIFDSIDLSLPLDSPARI 568
                     **************************544.4444.588********************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                     kvE++ ++rei+n+vaceg++r erhe++ekWr+ +e+ GF+ +++se++  q +lll++++++ y+v+   ++ + l+lgW d+pL++vSaW
  XP_015896272.1 569 KVEEM-FAREIRNIVACEGSDRLERHESFEKWRRLMEQGGFHCIRISERELIQSQLLLKMYSGENYNVKkqgQDGEGLTLGWLDQPLFTVSAW 660
                     *****.********************************************************999****5444477888************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.783266638IPR005202Transcription factor GRAS
PfamPF035142.2E-127292660IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE APAQFQACHF QLPSMSTQRL DLPCGFPRKD TARSQSIRPV  60
GLSVEKPIES KTSSCSLKQN IRLPPLATTA PPPSPQTAFA EARKEIKEEF WERGKSLKRF  120
AEQVDESFIN RAKRKRGSSD NGKANDDDFH EGGDSLSLGQ LGAGNFWFQP GFNPPQVPFS  180
LTCSGDEERV CLVPGEVISP PLPLSNNPWV ESVVTEITDL GEKVGETSHR QVKEASPSSS  240
SSESQNLALR LSEAVPEHEV GNGSTHPYDP HGGSGVEAGE EDIPVDHQGI ELVSLLTSCL  300
EAIGSKNIPL VNHFIAKLGE LASPRGGTPL SRLIAYYTEA LALRVTRLWP HIFHITTPRE  360
FDRMDDDSGS ALRLLNQVSP ILKFLHFTSN EILLRAFEGK DRVHIIDFDI KQGLQWPSLF  420
QSLASRTNPP SHVRITGIGE SKQELNETGD RLAGFAEEAL NLPFEFHPVV DRLEDVRLWM  480
LHVKEHESVA VNCVFQLHKT LYDGNGGSLR DFLGLIRSTN PTIVLMAEQE AEHNDPRLEA  540
RVSNSLKYYS AIFDSIDLSL PLDSPARIKV EEMFAREIRN IVACEGSDRL ERHESFEKWR  600
RLMEQGGFHC IRISERELIQ SQLLLKMYSG ENYNVKKQGQ DGEGLTLGWL DQPLFTVSAW  660
APVDVAGTSS SFSQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6928666213380Protein SCARECROW
5b3h_A1e-6928666212379Protein SCARECROW
5b3h_D1e-6928666212379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896272.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896272.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2N9I3Z90.0A0A2N9I3Z9_FAGSY; Uncharacterized protein
STRINGXP_006477403.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein