PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896248.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 213aa    MW: 24161.7 Da    PI: 10.283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19108158256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  XP_015896248.1 108 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 158
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-17107167No hitNo description
SuperFamilySSF541717.85E-23108165IPR016177DNA-binding domain
SMARTSM003801.1E-36108171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-31108166IPR001471AP2/ERF domain
PROSITE profilePS5103223.301108165IPR001471AP2/ERF domain
PRINTSPR003672.1E-10109120IPR001471AP2/ERF domain
PfamPF008471.6E-13109158IPR001471AP2/ERF domain
PRINTSPR003672.1E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MERMKENNVH FAFTDSFDIR SSLSNLILTS GTNTLDSIFS HCPPSCSTTN PVSEPLGSSV  60
YLHQIDLLQK FCNENRPNGA FNRYFQTNPL HQPACTTATF IAPLKKKLYR GVRQRHWGKW  120
VAEIRLPQNR MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNLKDP SKLGFGDCSR  180
LNALKIAVDA KIQAICQKVK REKAKKIAKK NGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-21105165263ATERF1
3gcc_A8e-21105165263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896421.11e-161ethylene-responsive transcription factor ERF061
SwissprotQ9C7W26e-59ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLM5WB921e-103M5WB92_PRUPE; Uncharacterized protein
STRINGEMJ105811e-104(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-54ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]