PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896232.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family HSF
Protein Properties Length: 285aa    MW: 31900.7 Da    PI: 6.5329
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.7e-36331242102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+i++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g+k ll++
  XP_015896232.1  33 FLTKTYQIVDDPAFDNLISWNEDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKRGEKLLLRE 118
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_015896232.1 119 IQRRKI 124
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.7E-3824116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5629122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-3430122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.8E-3233122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-203356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-207183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MALLPVEQTS ESEYGRGGGV SDLQSQRSIP TPFLTKTYQI VDDPAFDNLI SWNEDGSAFI  60
VWRPAEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDCFKR GEKLLLREIQ  120
RRKISPSVAI QAPTVTVAAV PAAARAFSPT NSDDDQVLSS NSSPMAVPLD LHRTTSCCTS  180
SSSGATTELL EENERLRKEN RQLSHELTQL RGLSNNILTL MTNYASSHQE IGQLPEARSV  240
EFMPRKQVES AGTTTSGDET TPPRLFGVSL GAKRTRRDEE EEKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-263312720125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896232.10.0heat stress transcription factor B-2b
RefseqXP_024935198.10.0heat stress transcription factor B-2b
RefseqXP_024935199.10.0heat stress transcription factor B-2b
SwissprotQ9T0D36e-91HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A438JJM61e-121A0A438JJM6_VITVI; Heat stress transcription factor B-2b
TrEMBLA5AK601e-119A5AK60_VITVI; Uncharacterized protein
TrEMBLD3Y3F41e-121D3Y3F4_VITPS; HSP transcription factor
TrEMBLF6HUF81e-121F6HUF8_VITVI; Uncharacterized protein
STRINGVIT_02s0025g04170.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.17e-74HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]