PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896191.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Trihelix
Protein Properties Length: 324aa    MW: 36749.2 Da    PI: 5.3984
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896191.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix31.83.7e-1027101278
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                     W+   +l L++    +e +  ++ +  ++W+ +++ + + g+ r++ qC+ kw++l  +y +ik+ e +  s+ +s 
  XP_015896191.1  27 WSAIDTLILVNEIAAVEADCLKALSTFQKWKIIAETCTALGVVRNSSQCRRKWDSLLLDYNRIKHLELQ--SGGESY 101
                     888889999999999999999999999*************************************98876..344445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2262783IPR017877Myb-like domain
PfamPF138378.0E-827102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAEKGSNSQS RRVSGSRQTR SQVAPDWSAI DTLILVNEIA AVEADCLKAL STFQKWKIIA  60
ETCTALGVVR NSSQCRRKWD SLLLDYNRIK HLELQSGGES YWSLNVETRK EFGLPENFDG  120
ELFQAIDNLV RAREDQSDTD PDNDPESRFE MHYVVKELGS KQQKRRLTHQ KSSAVENRTK  180
SFAEEKPSKS LVEEKPVKYV VDENVPKSST EEYPIKSPAE EKLQWSSVKE KAQKGRAKGK  240
EITGIEEKEQ MMALILQENA ERIHSIVAES ADYRAADVKG AKAEFVFDKS EVEFVRSQGD  300
KLIACLGNIV KTLDQLYHDV QECE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896191.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896191.10.0trihelix transcription factor ASR3
TrEMBLA0A2P5G1E41e-98A0A2P5G1E4_TREOI; Myb-like domain containing protein
STRINGEMJ282905e-94(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.14e-59sequence-specific DNA binding transcription factors