PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015896165.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NF-YC | ||||||||
Protein Properties | Length: 125aa MW: 13725 Da PI: 7.5128 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 108.1 | 5.4e-34 | 21 | 101 | 18 | 97 |
NF-YC 18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 +h+lPlarikki+k + edvkmis eaP+++skacelfi elt rsw+ + + krr l+k d+a+av tdifdflv+ v XP_015896165.1 21 RHSLPLARIKKIMKkSGEDVKMISGEAPIVFSKACELFIQELTKRSWMLTLQGKRRILHKEDVASAVIATDIFDFLVNLVS 101 79***********73579***********************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.55E-25 | 17 | 96 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.6E-31 | 18 | 87 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.7E-21 | 23 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MRQAGAYSGI LSGGISGKTG RHSLPLARIK KIMKKSGEDV KMISGEAPIV FSKACELFIQ 60 ELTKRSWMLT LQGKRRILHK EDVASAVIAT DIFDFLVNLV SDCDDDDPAD VHITTTEKTV 120 AVMEM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-32 | 22 | 100 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015896165.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896165.1 | 6e-88 | nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q9ZVL3 | 1e-31 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | B9RC88 | 2e-63 | B9RC88_RICCO; Ccaat-binding transcription factor, putative | ||||
STRING | XP_002509772.1 | 4e-64 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 3e-34 | nuclear factor Y, subunit C3 |