PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896067.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ARF
Protein Properties Length: 677aa    MW: 75696.3 Da    PI: 6.3037
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23126226198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f kvlt sd++++g +++ +k+a+e      + + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++
  XP_015896067.1 126 FTKVLTASDTSTHGGFSVLRKHATESlppldMAQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGENG 218
                     89*********************999****9444555669************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_015896067.1 219 ELRVGVRR 226
                     9*****98 PP
2Auxin_resp102.45.8e-34252331183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pr+  s+F+v+++k+++a+++k+++GmRfkm+fe++d++err+sGt+vgv+d++ ++W +SkWrsLk
  XP_015896067.1 252 ASHAVSTQTLFVVYYKPRT--SQFIVSLNKYLEAIDNKFTLGMRFKMRFEGDDAPERRFSGTIVGVEDVS-LNWVDSKWRSLK 331
                     789***************6..9**********************************************65.5*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-38115255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-39119241IPR015300DNA-binding pseudobarrel domain
CDDcd100175.04E-20126226No hitNo description
PROSITE profilePS5086312.365126228IPR003340B3 DNA binding domain
PfamPF023622.3E-21126226IPR003340B3 DNA binding domain
SMARTSM010191.8E-21126228IPR003340B3 DNA binding domain
PfamPF065071.9E-31252331IPR010525Auxin response factor
PfamPF023092.2E-7534649IPR033389AUX/IAA domain
SuperFamilySSF542771.28E-10560641No hitNo description
PROSITE profilePS5174523.264565646IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MMANRGGSFP QPNGLVEGDE LYPELWKACA GPLVDVPRAG ERVYYFPQGH MEQLEASTNQ  60
ELNQRIPLFN LPSKILCHVI DVQLRAEQET DEVYAQITLV PESNQAEPTS PDPCLPEPPR  120
PKVYPFTKVL TASDTSTHGG FSVLRKHATE SLPPLDMAQA TPTQELVAKD LHGYEWRFKH  180
IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGENGEL RVGVRRLARQ QSSMPSSVIS  240
SQSMHLGVLA TASHAVSTQT LFVVYYKPRT SQFIVSLNKY LEAIDNKFTL GMRFKMRFEG  300
DDAPERRFSG TIVGVEDVSL NWVDSKWRSL KVQWDESAAI PRPDRVSPWE IEPFVASVPA  360
SLAQPPVKNK RPRPPTEVPS HDTTYASAVW NPGPAASIDV TQMSVAPDGK RGDHAAWHHH  420
HQEGGWLSSP NASCTQHIFQ DTEDSKSVSM WPLLSTQNLS KLNEPVYDQV DKERKTETSN  480
SVRVFGVDLI NHSIHSPPIE KGQKEPHQPS CVNTEITEWR ASTLSAAESD PKSDVSKAPK  540
ERVSGQFQVS PKESQSKQSC SNSTRSRTKV QMQGMAVGRA VDLSMLDGYD QLIDELEEMF  600
DIRGQLRPRN KWEIIFTDDE GDMMLLGDDL WPDFCKMVRR ILICPSQDVK KMNSGSKPPI  660
SSLEGEGTVI SSESAEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17523541355Auxin response factor 1
4ldw_A1e-17523541355Auxin response factor 1
4ldw_B1e-17523541355Auxin response factor 1
4ldx_A1e-17523541355Auxin response factor 1
4ldx_B1e-17523541355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369373KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896067.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024935041.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A182BLY80.0A0A182BLY8_BOENI; Auxin response factor
STRINGXP_002518850.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9