PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896035.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 891aa    MW: 97447.2 Da    PI: 4.8467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000436797161355
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R++i +++ eLr ++P+      +K s  + L ++++Y+  Lq
  XP_015896035.1 679 RQQIQDRIKELRGIIPNG-----GKCSIDSLLDRTIKYMLFLQ 716
                     89**************98.....7999999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-1758152IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.014666715IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-4679723IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-6679721IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MGETEKSSVL KKMLKSLCVS NGWSYGVLWR FDQRNSMLLT MEDAYYEEQV KAVIDSMLLQ  60
VHILGEGIVG QTAFNGKHQW MCSDDSDGEW NSFRSIASQD VFQGDPEFHC QFSSGIKTIA  120
VIPVEPYGVV EFGSTEKILE RSEILDQTKR LFQDMQNPDV LIPSENVHSS EKSESYDLNG  180
LFASLISGNL NSEDVTPVSI DNSKEPSENN FTAMKFSQFS PCISDIHNGS MPFSHTDASN  240
VDGHLQNAGM GSHILLSDKP STRFDQVFQR STTPVKNDFA DKAPCISALS CEHSVLTSIN  300
PQFASESRGQ GSADAVLSRG NSLESCRNKG HNIQSNPTFA SLYGAGELTD LEKHFNGNSG  360
NLMDNQQPMS SIYAAGGEIP EKESSLHRFP KELAEEFKPT DLTTDLFNFY LTDDLSQLFT  420
SLPDQSINAM AKALSDDFSQ LIETTSASCS LVGGDVFADV PIEHPANFVH GSIANTFNAG  480
GQEKSGIVQC VERDLFDSLR PGIGCGQVGK CWEDTMMPIS SGGNSSSSTL SKCISELDAR  540
SMSSSKKGLF SELGLEELLA AASTSCSATN SNLEDQSSST KRRRIESSTL NCNEAQLARF  600
TGSSGSISSM NYNLDKLNNL VAKKEVIPKS QVGLWIDDSY SITAGSAVLS KTQKPEEQTK  660
TTRKRARPGE STRPRPKDRQ QIQDRIKELR GIIPNGGKCS IDSLLDRTIK YMLFLQSVTK  720
NADKLKQADE PKLISQENGV VLKDQGTACG SGGGGGVTWA FEVGGQTMVC PIIVEDLNPP  780
GQMLIEMLCE EQGFFLEIAD IIRGFGLNIL KGRMEVRENK IWARFIVEAN RHVTRIDIFW  840
SLVRLLQQTT TSGIDSTNNQ PSNAIDGGLH LMDSYQKPAL PPPISLTGTL R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1580584KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896035.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896035.10.0transcription factor bHLH157
RefseqXP_015896324.10.0transcription factor bHLH157-like
TrEMBLA0A2P5F4X00.0A0A2P5F4X0_TREOI; MYC/MYB transcription factor
STRINGXP_008239218.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69551621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-53conserved peptide upstream open reading frame 7