PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015896021.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Dof

Protein Properties

Length: 299aa MW: 32686.2 Da PI: 8.7798

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015896021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.3e-40	40	101	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss XP_015896021.1 40 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 101 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	33	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	42	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEDIVV TNTCTPKPGN LAERKARPQK EQALNCPRCN STNTKFCYYN 60 NYSLTQPRYF CKTCRRYWTE GGSLRNIPVG GGSRKNKRSS SSSSQSSHQT SSSKRLPDLV 120 QPHHHQNAKI NINQPQDLNL AFPNISDLVQ LPNNNIENNN NNNNNKNHSL AHVSSSSTTS 180 TTSTSSATHL SALELLNGLT SRGFNSFMPM SVPADPNTAV YASGFPNLQE FKPTLNFSLD 240 GLGGAAYGSL QGVQESNGRL LFPFEDLKQV STTPGIEPSK DQGAETTGYW TGMLGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015896021.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT202286	4e-82	KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015896021.1	0.0	dof zinc finger protein DOF4.6
Swissprot	Q8LAP8	3e-67	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A061G2Y5	1e-122	A0A061G2Y5_THECC; F-box family protein isoform 1
STRING	EOY23946	1e-123	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-54	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]