PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895883.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 732aa    MW: 81436.9 Da    PI: 5.564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07135157427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ff++ G C  GdrC F Hgp
  XP_015895883.1 135 VPCIFFQK-GLCLKGDRCAFLHGP 157
                     69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033463IPR000571Zinc finger, CCCH-type
PfamPF156631.8E-113589No hitNo description
SMARTSM003560.00183562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.1786591IPR000571Zinc finger, CCCH-type
SMARTSM003560.126790IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5128157IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5131157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5132156IPR000571Zinc finger, CCCH-type
PfamPF146080.025136156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MVAGAQQKPQ HQSIHQQQQP PQQVPTTSAE EEALKRNTDC VYFLASPLTC KKGSECEYRH  60
SEYARVNPRD CWYWLNGNCL NPKCAFRHPP LDGLLGTQAA TTVGSSVSSA QVVAAPAPAP  120
APATLVPNNS SKQAVPCIFF QKGLCLKGDR CAFLHGPNPT NTSKVLQAPA ATQGSEPMNP  180
KKVFGSLQKC TQDQKIINTN VSKAVGIHPE VSSALKLETA LPKNRVSAER NVPATKASDD  240
EALRYKAMSS LPVINGNSII RPNRTHQIIV SDDHGFQNGK DADEFLRESS PGFDVLVDDE  300
LGDPDYFHGE DQYGRTRAHD GRNMNPVDDY DIDRSADYSS VADADRERFR DPRGYDSYEH  360
LQEQYGWDQH RASSERVVVG PAHLDRRGYH KSGSPDNING SDLRNRLSKQ KRGNGLRSVI  420
SHDYDRTDHF EEQNYRGSSR RDSHQLHPHE GSLSSRLRGR IKLPRDSSPA NGSDFRLERE  480
VDRGRNRSRL SPSRPQVSSP QGRLQDRIKG RLQGDYHNEG RISRGLRIRR EDDRSGDFAG  540
PKSLAELKVG KVGESKDQSL LGKRKSVRME DPQQSEGHLS FEGPKPLSEI LKRKREAGVG  600
DSGSGKSSLN KEENNQRQMQ SAVSVGTEQE GNKEESKSAI GTEEKTNAAH GQSTQEPNVN  660
EFEAEDGMIY DEEDQELDGE EQRDGDYDYE QGEEGDYNYD GENVEGEEEY IEDEDVDGDG  720
DDFAKKIGVM FS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895883.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895883.10.0zinc finger CCCH domain-containing protein 17
TrEMBLM5XNI50.0M5XNI5_PRUPE; Uncharacterized protein
STRINGXP_008220996.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137