PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895876.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 385aa    MW: 43346.5 Da    PI: 7.2147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.2e-09135159126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC  f   G C+ G++C+FaHg
  XP_015895876.1 135 FKTRLCAKFKV-GSCRNGENCNFAHG 159
                     79*********.*************8 PP

2zf-CCCH28.23.3e-09201223325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     ++lC+ f+ + +C+yGdrC+F H
  XP_015895876.1 201 MKLCKKFYNGEECPYGDRCNFLH 223
                     689******66************ PP

3zf-CCCH41.32.6e-13274300127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt++C+ +  tG+C++G++C+FaHg+
  XP_015895876.1 274 WKTKICNKWEITGQCPFGEKCHFAHGQ 300
                     8************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.3E-14132167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-8133165IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047134161IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-7135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-7198225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117198226IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4198225IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-7201223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-9201224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-16269304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835273301IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9273300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-10273304IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10274300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSFPDPRPPF MRPYGMGSDA IGCWPQFPMN NEDQYSQLEQ HQGPSFKRAK TSSEETQSTS  60
MFYPSSSDSI ACWPQFPINN EDQQHSQFDH QQQKKPRISE EGIQSNSLPF TPPPMNTRMI  120
PPNAPVNKGT SNIFFKTRLC AKFKVGSCRN GENCNFAHGI EDMRQPPPNW QELVGTRFGD  180
EDRSSSGNNN WDDDQKIIHR MKLCKKFYNG EECPYGDRCN FLHEDPSKFR DEMGRFRESA  240
AISIGTTGPP VVNGTTSVIH SEDNRPVNIK PASWKTKICN KWEITGQCPF GEKCHFAHGQ  300
AELQLHVVRI EAEALNSGSF PTKPQVVAAN DLSPSVNTNV ASFDGEGKSK KCLLKWKGPK  360
NINRIYADWL DDLPLGNNLP SKVEG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895876.10.0zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT814e-99C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2P5C1L11e-156A0A2P5C1L1_TREOI; Zinc finger, CCCH-type
STRINGXP_002524459.11e-143(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-99C3H family protein