PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C3H | ||||||||
Protein Properties | Length: 385aa MW: 43346.5 Da PI: 7.2147 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.7 | 2.2e-09 | 135 | 159 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC f G C+ G++C+FaHg XP_015895876.1 135 FKTRLCAKFKV-GSCRNGENCNFAHG 159 79*********.*************8 PP | |||||||
2 | zf-CCCH | 28.2 | 3.3e-09 | 201 | 223 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H XP_015895876.1 201 MKLCKKFYNGEECPYGDRCNFLH 223 689******66************ PP | |||||||
3 | zf-CCCH | 41.3 | 2.6e-13 | 274 | 300 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C+ + tG+C++G++C+FaHg+ XP_015895876.1 274 WKTKICNKWEITGQCPFGEKCHFAHGQ 300 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-14 | 132 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-8 | 133 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-5 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.047 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-7 | 135 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-7 | 198 | 225 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 198 | 226 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-4 | 198 | 225 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-7 | 201 | 223 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-9 | 201 | 224 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-16 | 269 | 304 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.835 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-9 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-10 | 273 | 304 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MSFPDPRPPF MRPYGMGSDA IGCWPQFPMN NEDQYSQLEQ HQGPSFKRAK TSSEETQSTS 60 MFYPSSSDSI ACWPQFPINN EDQQHSQFDH QQQKKPRISE EGIQSNSLPF TPPPMNTRMI 120 PPNAPVNKGT SNIFFKTRLC AKFKVGSCRN GENCNFAHGI EDMRQPPPNW QELVGTRFGD 180 EDRSSSGNNN WDDDQKIIHR MKLCKKFYNG EECPYGDRCN FLHEDPSKFR DEMGRFRESA 240 AISIGTTGPP VVNGTTSVIH SEDNRPVNIK PASWKTKICN KWEITGQCPF GEKCHFAHGQ 300 AELQLHVVRI EAEALNSGSF PTKPQVVAAN DLSPSVNTNV ASFDGEGKSK KCLLKWKGPK 360 NINRIYADWL DDLPLGNNLP SKVEG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895876.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895876.1 | 0.0 | zinc finger CCCH domain-containing protein 39-like | ||||
Swissprot | Q9LT81 | 4e-99 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A2P5C1L1 | 1e-156 | A0A2P5C1L1_TREOI; Zinc finger, CCCH-type | ||||
STRING | XP_002524459.1 | 1e-143 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 8e-99 | C3H family protein |