PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895815.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family AP2
Protein Properties Length: 360aa    MW: 40579.6 Da    PI: 9.2213
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1549108155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  XP_015895815.1  49 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 108
                     57*******************999955656446*************************98 PP
2AP251.23.1e-16151202155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_015895815.1 151 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 202
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-1249108IPR001471AP2/ERF domain
CDDcd000187.80E-1149118No hitNo description
SuperFamilySSF541713.33E-1749118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-1650117IPR001471AP2/ERF domain
PROSITE profilePS5103220.3150116IPR001471AP2/ERF domain
SMARTSM003802.5E-2750122IPR001471AP2/ERF domain
PRINTSPR003674.1E-65162IPR001471AP2/ERF domain
PfamPF008475.7E-12151202IPR001471AP2/ERF domain
CDDcd000185.38E-24151212No hitNo description
SuperFamilySSF541711.05E-17151212IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-17152211IPR001471AP2/ERF domain
PROSITE profilePS5103218.334152210IPR001471AP2/ERF domain
SMARTSM003801.0E-24152216IPR001471AP2/ERF domain
PRINTSPR003674.1E-6192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAKTTKQNQK NTSTASKNDS IKNNNNSATT KAKRTRKTVP RNSPQQRSSI YRGVTRHRWT  60
GRYEAHLWDK NCWNESQNKK GRQVYLGAYD DEEAAAHAYD LAALKYWGQD TILNFPLSTY  120
EEELKEMNGQ SKEEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL  180
GTYATQEEAA TAYDMAAIEY RGLNAVTNFD LSRYVKWLHP NHQNNPSNFQ PNSDGDLNPI  240
PNQNPQLGLD LSPSHETSSA NKSTTVLPRT AIGGGGNSTS SALGLLLQST KFKEMLERTS  300
TTSNYLSPPP EASPPRRSFP DDIQTYFHCH EPSSHVEGDD IIFGDLDTFT SPFFHSELDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895815.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-123AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2B9730.0A0A2K2B973_POPTR; Uncharacterized protein
STRINGPOPTR_0003s18350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-98ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]