PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895704.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family RAV
Protein Properties Length: 390aa    MW: 43022.2 Da    PI: 9.3894
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.6e-1480128155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  XP_015895704.1  80 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 128
                     89****9888.8*********3.....5**********99*************98 PP
2B31031.6e-32220319196
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+ tpsdv+k++rlv+pk++ae+h    +g++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++  s+++
  XP_015895704.1 220 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGSTSKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGSDKQ 314
                     89****************************888899***************************************************88768888 PP

                     .EEEE CS
              B3  92 lvvkv 96 
                     l++ +
  XP_015895704.1 315 LYIDW 319
                     88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-1780136IPR016177DNA-binding domain
CDDcd000181.40E-2580135No hitNo description
PfamPF008473.8E-980128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2081136IPR001471AP2/ERF domain
PROSITE profilePS5103220.23181136IPR001471AP2/ERF domain
SMARTSM003801.8E-2981142IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.7E-43213331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-31218322IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-28219308No hitNo description
PfamPF023627.8E-30220320IPR003340B3 DNA binding domain
PROSITE profilePS5086314.607220323IPR003340B3 DNA binding domain
SMARTSM010192.0E-25220323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEGSCTDEST TSDSISISPS TTPPPLPFLP HPPPPPPPPI KTTTTTKSPP ESLCRVGSGT  60
SVILDSENGV EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAAKAYD  120
VAAQRFRGRD AVTNFKPLSS ETDGDDEIEA AFLNSHSKAE IVDMLRKHTY NDELEQSKRN  180
YGLDNNNNNN SPHKKSGNFR EIGSALGSSD RVQKAREQLF EKAVTPSDVG KLNRLVIPKQ  240
HAEKHFPLQS GSTSKGVLLN FEDVGGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG  300
DIVSFQRSTG SDKQLYIDWK TRSTSSGGAS NQTAVGPVQP VQMVRLFGVN IFKIPGSDGI  360
GGGCNVGKRM REMELFELEC SKKPRIIGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-6021733011125DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895704.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895704.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like isoform X1
SwissprotQ9C6M51e-151RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2C9UJZ40.0A0A2C9UJZ4_MANES; Uncharacterized protein
STRINGcassava4.1_010157m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-148RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]