PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 442aa MW: 49899.5 Da PI: 5.2442 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103 | 3.9e-32 | 69 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+P+d+e++ +L++k+ + + + +++e +i++v+P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ XP_015895659.1 69 LPRGVKFDPSDQEII-WHLRAKAGEGGlkshpfI---NefipTVEEDdGICYVHPRKLP-GVKQDGSVSHFFHRAVKAYNTGTRKRRKIHgddcg 158 799************.789999998885554332...133222444435**********.677888899******************85555555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+y r k+ekt+Wvmh+y+l XP_015895659.1 159 DVRWHKTGRTKPVIL-DGVQRGCKKIMVLYmsVVRGGKAEKTNWVMHQYHL 208 889************.99************5434888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-37 | 54 | 227 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.363 | 69 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-14 | 70 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MTFIVDRNKG YGFEPSWLVD SNRIATKIKS ASGISQPERT KWKSNPTRTC PNCQHVIDNS 60 DVVQEWPGLP RGVKFDPSDQ EIIWHLRAKA GEGGLKSHPF INEFIPTVEE DDGICYVHPR 120 KLPGVKQDGS VSHFFHRAVK AYNTGTRKRR KIHGDDCGDV RWHKTGRTKP VILDGVQRGC 180 KKIMVLYMSV VRGGKAEKTN WVMHQYHLGT EEDEKDGEYV ISKVFYQQNQ VKQGDKTDQD 240 ISESIDAIVA KVDPVTPKSS TPEPPRNEQH HSDFELGQDA VTFCPAPAAM HTEIDYIEDE 300 VQPECENPGH NNQQKAENQV DQQLGHNENC APEEPKWWDS ESQNLLDSQQ LVEGLSLCDE 360 LLQSQSPNRD AHGNGVPMKN KIRLSDYAHL GPEDLKKDLE ECQNLVIDPA NIELDTPPDF 420 RLSQLDFGSQ ESYTAWGGRV AD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895659.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024933772.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like, partial | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A060A661 | 0.0 | A0A060A661_BOENI; NAC domain-containing protein | ||||
STRING | POPTR_0008s11550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |