PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895657.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 307aa    MW: 34849.5 Da    PI: 7.0591
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05131150120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  XP_015895657.1 131 FSCSVCNKTFNRYNNMQMHM 150
                     89*****************9 PP
2zf-C2H213.80.00017216238123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  + + ++H +++
  XP_015895657.1 216 FGCRKCGKPFAVRGDWRTHEKNC 238
                     56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-5127153No hitNo description
SMARTSM003550.071131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429131158IPR007087Zinc finger, C2H2
PfamPF128748.0E-5131150No hitNo description
Gene3DG3DSA:3.30.160.604.7E-6131150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SMARTSM00355220179211IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.4E-5199236No hitNo description
Gene3DG3DSA:3.30.160.607.3E-5202236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140216236IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQTLSFTCIS SSESACLEAD EEDEESIFLS LGPPGQHIHK HYPIYHHHSS STRSDHHHHH  60
HQNHHHNQNP NNSTDHQDHG VTIALRIGAP PVISTRPRGS SSNPNHHISA PIEGQYWIPS  120
PAQILVGPTQ FSCSVCNKTF NRYNNMQMHM WGHGSQYRKG PESLRGTKPA SSMLRLPCYC  180
CAEGCKNNIE HPRSRPLKDF RTLQTHYKRK HGAKPFGCRK CGKPFAVRGD WRTHEKNCGK  240
LWFCICGSDF KHKRSLKDHV RAFGDGHAPH AVELCEVEEE EEEEEEEEDA EEQEVENGGH  300
GSVVFNN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895657.10.0zinc finger protein WIP6
SwissprotQ9FX681e-119ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2N9F1Q51e-148A0A2N9F1Q5_FAGSY; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-113C2H2-like zinc finger protein