PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015895415.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 482aa MW: 53317.2 Da PI: 7.5016

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015895415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.8e-05	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+Cg+sF++ ++ H ++ XP_015895415.1 124 YECPICGQSFRSEEEVSEHVDSC 146 99************999998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	8.3E-8	26	64	No hit	No description
PROSITE profile	PS50157	8.787	124	142	IPR007087	Zinc finger, C2H2
SuperFamily	SSF143503	9.55E-18	186	259	IPR018997	PUB domain
SMART	SM00580	2.6E-20	189	256	IPR018997	PUB domain
Pfam	PF09409	5.4E-16	190	260	IPR018997	PUB domain
CDD	cd09212	1.44E-19	190	271	No hit	No description
SuperFamily	SSF54236	5.43E-12	341	449	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	8.3E-8	353	445	No hit	No description
PROSITE profile	PS50033	10.556	365	449	IPR001012	UBX domain
Pfam	PF00789	1.0E-5	366	415	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MGDMKDKVKG FMKKVNNPFS SSSSSGKFKG QGRVLGSSSS GPSNPILTRP SQTPQQKPIP 60 SYSSSSASLN SKPSSQKTQN HEQSRSQVSN NSNPDRKPAN GFDAFDSLIT TGKRSQNGHS 120 LNVYECPICG QSFRSEEEVS EHVDSCENDS VENNRDDGAS GLNNDRGESS QSELEVCIGT 180 FLSGKPTAGS VEVVLKLFRN IVGEPQNAKF RKIRMSNPKI REAIGEVAGG VELLELVGFE 240 LREEEGEMWA AMEVPSEERI GIIKRTIDLL EPPKVQEPQK MKNPSSQASV GADEKVEPKK 300 IDRKVRVFFA VSESIAAKIV LPDSFYNLSF DELKREADLR RKKIADSQLL IPKSYKEKQA 360 KAARRKYTKT VIRIHFPDGV VLQGFFNPWE PTSSLYEFVS SALKEPSLEY DLLHPVLVKR 420 RVIPRFPAAG EKLPTLDEED LVPSALIKFR PVETDSIVFT GLRNELLQIS EPLEVDSAVA 480 SV

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MGDMKDKVKG FMKKVNNPFS SSSSSGKFKG QGRVLGSSSS GPSNPILTRP SQTPQQKPIP  60
SYSSSSASLN SKPSSQKTQN HEQSRSQVSN NSNPDRKPAN GFDAFDSLIT TGKRSQNGHS  120
LNVYECPICG QSFRSEEEVS EHVDSCENDS VENNRDDGAS GLNNDRGESS QSELEVCIGT  180
FLSGKPTAGS VEVVLKLFRN IVGEPQNAKF RKIRMSNPKI REAIGEVAGG VELLELVGFE  240
LREEEGEMWA AMEVPSEERI GIIKRTIDLL EPPKVQEPQK MKNPSSQASV GADEKVEPKK  300
IDRKVRVFFA VSESIAAKIV LPDSFYNLSF DELKREADLR RKKIADSQLL IPKSYKEKQA  360
KAARRKYTKT VIRIHFPDGV VLQGFFNPWE PTSSLYEFVS SALKEPSLEY DLLHPVLVKR  420
RVIPRFPAAG EKLPTLDEED LVPSALIKFR PVETDSIVFT GLRNELLQIS EPLEVDSAVA  480
SV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	4e-13	321	449	24	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015895415.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895415.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A2I4G1U9	0.0	A0A2I4G1U9_JUGRE; plant UBX domain-containing protein 2 isoform X1
STRING	XP_008221449.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]