PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895382.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21886 Da    PI: 10.6136
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.94.6e-171152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i+n+  r+ tf kR++g++KK +ELS+LC++e + ii s+  
  XP_015895382.1 11 IKNDVARKATFKKRKKGLMKKLSELSILCGIETCTIICSPYE 52
                    99************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.241149IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-23160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-24295IPR002100Transcription factor, MADS-box
CDDcd002662.69E-16285No hitNo description
PRINTSPR004041.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-171153IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTRKKVKLAY IKNDVARKAT FKKRKKGLMK KLSELSILCG IETCTIICSP YEKKPEVWPS  60
TMGVHKTLAR FRKMPESDQS KNMMSQESYL RKNIEKMEEQ LKKQHKENHE KEIEQMMYQS  120
LAGDKLIKAM TNVELNELGK LVEKNIMEIG EKIESLKKIM RTPPPPPPPP QRLRTKLQIL  180
RARQHVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIKNDVARKATFKKRK
21631RKATFKKRKKGLMKKL
32125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895382.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895382.11e-134agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-44AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1S3ZJU34e-61A0A1S3ZJU3_TOBAC; agamous-like MADS-box protein AGL80
STRINGXP_008450513.11e-61(Cucumis melo)
STRINGPOPTR_0005s00420.11e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-46AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]