PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 27612.6 Da PI: 5.9443 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_015895350.1 98 FSCNYCRRKFYSSQALGGHQNAH 120 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.41E-6 | 95 | 126 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 98 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 100 | 120 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MIRPDFNLEA ENDSEVSSQV ASNIALQDAS PDPSSKDSTT TSSCLTNLNK LQQDSGRVSL 60 DLTLQFSSSS IDEELKARVS TSNEVAAHNS MPTAPRVFSC NYCRRKFYSS QALGGHQNAH 120 KRERTMAKRA MRMGIFSDRY TSLASLPLHG SAFRSLGIEA HAAVHERITP SDQRPPDNTV 180 GVARFQQGYF GLPMFMEDDD VGLFWPGSFR QVGEGMNGGL EIQFAQNSDM NAGTTMPSTN 240 TSSSSSPDLT LKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF189342 | 4e-42 | KF189342.1 Frangula alnus subsp. alnus clone Contig34311 polymorphic genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895350.1 | 0.0 | zinc finger protein 4-like | ||||
Swissprot | Q39263 | 2e-44 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A2P5C5T0 | 1e-126 | A0A2P5C5T0_TREOI; Yin/yang transcription factor | ||||
STRING | XP_010105555.1 | 1e-122 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 6e-45 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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