PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895217.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27878.7 Da    PI: 7.8823
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.83.8e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLC+ eva+iifs++gklye++s
  XP_015895217.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCESEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box97.42.2e-32821739100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + +++++s +qe+ kLk+++e Lq++qR+llGed+e +  k+L+qLe+q++ sl++iRs+K++l+l+q+ +lqkke++l e+n++Lr+klee
  XP_015895217.1  82 QPAKDTQSNYQEYLKLKAKVELLQSTQRNLLGEDIEHMGTKDLEQLEHQMDASLRQIRSTKTQLMLDQLADLQKKEEMLLETNNSLRRKLEE 173
                     567889***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.45161IPR002100Transcription factor, MADS-box
CDDcd002653.75E-42278No hitNo description
SuperFamilySSF554551.7E-31282IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2785171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.52787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE SEVALIIFSN RGKLYEFCSG  60
HSMAKTLERY DRCSYGALEV KQPAKDTQSN YQEYLKLKAK VELLQSTQRN LLGEDIEHMG  120
TKDLEQLEHQ MDASLRQIRS TKTQLMLDQL ADLQKKEEML LETNNSLRRK LEESSAAVQP  180
SWEACREQSL TYHPAQTDQG FIEPLQCNNT LQMSYSSAVT DEVHGATSSA AAQKFNGFFP  240
GWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-28751711101Developmental protein SEPALLATA 3
4ox0_B7e-28751711101Developmental protein SEPALLATA 3
4ox0_C7e-28751711101Developmental protein SEPALLATA 3
4ox0_D7e-28751711101Developmental protein SEPALLATA 3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895217.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6231635e-41AB623163.2 Pyrus pyrifolia var. culta PpMADS9-1 mRNA for MADS-box protein, complete cds.
GenBankAJ0016815e-41AJ001681.1 Malus domestica mRNA for MADS box protein MdMADS8.
GenBankKC4152375e-41KC415237.1 Malus domestica cultivar Fuji Beni Shogun MADS8-2 mRNA, complete cds.
GenBankKC4152385e-41KC415238.1 Malus domestica cultivar Fuji Beni Shogun MADS8-1 mRNA, complete cds.
GenBankKP1640025e-41KP164002.1 Pyrus pyrifolia clone PpSEP1-1 SEP1-like MADS-box protein mRNA, complete cds.
GenBankKP1640165e-41KP164016.1 Pyrus pyrifolia clone PpSEP1-2 SEP1-like MADS-box protein mRNA, complete cds.
GenBankU789475e-41U78947.1 Malus domestica MADS-box protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895217.10.0MADS-box protein CMB1-like isoform X1
SwissprotQ396851e-113CMB1_DIACA; MADS-box protein CMB1
TrEMBLD7T9Z71e-119D7T9Z7_VITVI; Uncharacterized protein
STRINGVIT_01s0011g00110.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-103MIKC_MADS family protein