PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | SBP | ||||||||
Protein Properties | Length: 514aa MW: 57356.1 Da PI: 7.6511 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.6 | 3.2e-42 | 172 | 247 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dls+ k+yh+rhkvC+vhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q XP_015895206.1 172 CQVHGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQ 247 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-34 | 167 | 233 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.906 | 169 | 246 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-40 | 170 | 251 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.6E-32 | 172 | 245 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MESWNLASEG KSLLFSDELD WSDAFPRSRK ALIQCDNGLV SSRESVESME LMELGFSDMI 60 RRPFHGSQGL EILCGDQVGN CSSSRVSSPT CLITSNSSFG EEESGSKLSS PFMESISQDS 120 SLIDLKLGRF VDCKSSQNHE HSKEKPNLSS VRPSLLAKRS RTRGSYPQTP FCQVHGCNMD 180 LSSSKDYHKR HKVCDVHSKT AKVIVNGIEQ RFCQQCSRFH LLAEFDDGKR SCRRRLAGHN 240 ERRRKPQLDS LSDKSHKLFQ SYQGTRYLGT LPKRTPYVFP DILPGAIRYP GKYGQANQYG 300 NVRLEDEPLY SPQFALPTTS RQLHSKSFIH LHDIGKHHAS GISTSRTEDY DFDTASTVQK 360 SSVSGTSNST CALSLLSAQS QNLSCHSAEI PTASPLIQGA HHGISQLTDK PLRLRSTERY 420 GANGFYSCGM NSMGVNQLES IVLPEASQAV DFQVHADRAF QESDCLDAKY CLSPEHGSTV 480 DLLQLSSHLQ RVERQRNFAQ IKQENEEFCC FPTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-29 | 171 | 245 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895206.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895206.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2P5FHG1 | 0.0 | A0A2P5FHG1_TREOI; SBP-box transcription factor | ||||
STRING | XP_010091609.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 3e-51 | SBP family protein |