PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015895131.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 341aa MW: 38331 Da PI: 7.6857

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015895131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.7e-33	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl XP_015895131.1 15 KPRLKWTPELHQRFVEAVSQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.011	12	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-31	13	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-17	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-23	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	7.1E-9	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-22	112	158	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MQNQNMNLVL STDAKPRLKW TPELHQRFVE AVSQLGGADK ATPKSLMRVM GIPGLTLYHL 60 KSHLQKYRLG KSQQSENCSD RKQEDFKEIQ DGDVHFNAEI NERTENQIND LQIAQALQLQ 120 MEVQRKLHEQ IEVQRHLQLR IEAQGKYLQS VLKKAQETLA GYNSSSMGVE LAKAELSQLV 180 SMVNSGLPSS SHSELTDRRG SSLKNLESKQ MRGTICSMES SLTSSESSGR KEEDQPMDQN 240 GEPHKSNMAS VELQLIEVHP EYKPWNNVPS NQASGRKRSG STISDGICVE QPVPKRSPNH 300 RDKNTNHMRK SGFLETLDLN SQYQNDIDSG PKAIDLNCKG V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-20	14	71	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015895131.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895131.1	0.0	myb family transcription factor PHL8 isoform X2
Swissprot	F4I274	2e-81	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A2P5AEU9	0.0	A0A2P5AEU9_TREOI; Octamer-binding transcription factor
STRING	XP_010108678.1	1e-174	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	3e-83	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]