PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 345aa MW: 37662.9 Da PI: 8.2025 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.9 | 5.7e-34 | 62 | 119 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v Y+eClkNhAas+Ggha+DGCgEfmp +++ +++++lkCaACgCHRnFHRre++e XP_015895093.1 62 VVSYRECLKNHAASIGGHALDGCGEFMPCPTAIpTDPTSLKCAACGCHRNFHRREPDE 119 689**************************99999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 2.07E-6 | 47 | 55 | No hit | No description |
ProDom | PD125774 | 3.0E-21 | 63 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.7E-28 | 63 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.575 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.8E-31 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-28 | 222 | 292 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.27E-17 | 223 | 292 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-24 | 231 | 287 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MDLSPSPTNT IKTPDTDTET PPEAQPTKSL SFTNGSLKRH HPQPPPPPPP PPPPPPPPSS 60 MVVSYRECLK NHAASIGGHA LDGCGEFMPC PTAIPTDPTS LKCAACGCHR NFHRREPDEP 120 ITGCKILSFH HRYPSPPLPP PIRPCHRSSS PSLSPSRSSS PGPTPSPHSP PPVSHLPPNS 180 YFASPPQMLL ALSTGFSGPS DEHHNHQHHH NQSFNQTAVM MKTTTENSNG RKRFRTKFSQ 240 EQKEKMHLFA EKVGWKMVKS DEGIVEEFCN EVGVGKGVLK VWMHNNKHTL GKRDKGNLEG 300 NVDVDDNNNN NNNNNNGGGD RVLNNEDRKA DFNLFSNGSS SSPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 232 | 289 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895093.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895093.1 | 0.0 | zinc-finger homeodomain protein 11-like | ||||
Swissprot | Q9SEZ1 | 1e-62 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A2P5D1E8 | 1e-116 | A0A2P5D1E8_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_008221618.1 | 1e-95 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-29 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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