PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895075.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family NAC
Protein Properties Length: 409aa    MW: 45863.8 Da    PI: 7.6501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.3e-52151421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+
  XP_015895075.1  15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 108
                     579***************************.89***************8888999***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  XP_015895075.1 109 eGTKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 142
                     56667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-5814174IPR003441NAC domain
PROSITE profilePS5100556.90215174IPR003441NAC domain
PfamPF023651.1E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEDKNNDADK LDEVMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKYDPWDL  60
PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG TKCIGLKKSL  120
VFYKGRAAKG VKTDWMMHEF RLPSLTDSVP PKRLMDKSII PANDSWAICR IFKKTNSTAQ  180
RALSHSWVSS LSETNACDLL PKCSSRNTQF SSDQNMSFTV PKTTSSVPFQ FCSNNDIQNS  240
SSNTVSPTDF FSYKPYQLPI SNGDFTPNFI FSPLETSSAP SKSTVDVSSM LLNMPSSMLG  300
DFGIKASESI GFSGSQQEQC TGFSIALPQE QVSAGNVSEN ALFKNLNMNV ADTEDHWEAG  360
RTNIGFPFGL PLPLNTVIGD AWKPNLLWDS SPCPSEMSTT SFFTTKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5461817171NO APICAL MERISTEM PROTEIN
1ut4_B1e-5461817171NO APICAL MERISTEM PROTEIN
1ut7_A1e-5461817171NO APICAL MERISTEM PROTEIN
1ut7_B1e-5461817171NO APICAL MERISTEM PROTEIN
4dul_A1e-5461817171NAC domain-containing protein 19
4dul_B1e-5461817171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895075.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895075.10.0protein FEZ
SwissprotQ9ZVH01e-116FEZ_ARATH; Protein FEZ
TrEMBLF6HPC30.0F6HPC3_VITVI; Uncharacterized protein
STRINGVIT_01s0026g02360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-116NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]