PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 344aa MW: 38738.8 Da PI: 7.2902 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.1 | 3.6e-21 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk XP_015895059.1 9 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 689****************************************97 PP | |||||||
2 | K-box | 15.3 | 8.3e-07 | 111 | 175 | 12 | 77 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqi 77 +++e l++++ L+++++n+ + R + +L++++ ++eL +e+ L +sl +iR +K+ l ++q+ XP_015895059.1 111 SQSEDLSNQSGLLRAQLSNIHK--RLSCWTNLDEINnVEELVLMENSLRQSLDQIRRHKESLQKQQL 175 5678899999999999999987..68899****995499*********************9988886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.857 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.13E-25 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 5.76E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-18 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCSGK 60 RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIDAFLGIS SQSEDLSNQS 120 GLLRAQLSNI HKRLSCWTNL DEINNVEELV LMENSLRQSL DQIRRHKESL QKQQLMPLEC 180 TGQFQNGLHI PFKMGAEQQL QPLSWIPNSD NQHMVLPEEA SLLPPRDVEC SASSSFGSYS 240 GYFGTSKNSE ISNSGQENGI PAPMRLQLGG QFSYLPYNLN VLSDARFQPS AEMNQQENTV 300 DYHVNGNYEV PRHGYETAQH SWASTSGPCA VSMFDDHLYP QQPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 3e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 3e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 3e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895059.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895057.1 | 0.0 | agamous-like MADS-box protein AGL30 | ||||
Refseq | XP_015895058.1 | 0.0 | agamous-like MADS-box protein AGL30 | ||||
Refseq | XP_015895059.1 | 0.0 | agamous-like MADS-box protein AGL30 | ||||
Swissprot | Q1PFA4 | 1e-108 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A2I4GMX6 | 0.0 | A0A2I4GMX6_JUGRE; agamous-like MADS-box protein AGL30 isoform X5 | ||||
STRING | XP_008339884.1 | 0.0 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 6e-86 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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