PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015895058.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 344aa    MW: 38738.8 Da    PI: 7.2902
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015895058.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.13.6e-21953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr en+  rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  XP_015895058.1  9 KRLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53
                    689****************************************97 PP
2K-box15.38.3e-071111751277
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqi 77 
                     +++e l++++  L+++++n+ +  R   + +L++++ ++eL  +e+ L +sl +iR +K+ l ++q+
  XP_015895058.1 111 SQSEDLSNQSGLLRAQLSNIHK--RLSCWTNLDEINnVEELVLMENSLRQSLDQIRRHKESLQKQQL 175
                     5678899999999999999987..68899****995499*********************9988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-29160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.857153IPR002100Transcription factor, MADS-box
CDDcd002661.13E-25282No hitNo description
SuperFamilySSF554555.76E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-17323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCSGK  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIDAFLGIS SQSEDLSNQS  120
GLLRAQLSNI HKRLSCWTNL DEINNVEELV LMENSLRQSL DQIRRHKESL QKQQLMPLEC  180
TGQFQNGLHI PFKMGAEQQL QPLSWIPNSD NQHMVLPEEA SLLPPRDVEC SASSSFGSYS  240
GYFGTSKNSE ISNSGQENGI PAPMRLQLGG QFSYLPYNLN VLSDARFQPS AEMNQQENTV  300
DYHVNGNYEV PRHGYETAQH SWASTSGPCA VSMFDDHLYP QQPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-13192190MEF2 CHIMERA
6byy_B3e-13192190MEF2 CHIMERA
6byy_C3e-13192190MEF2 CHIMERA
6byy_D3e-13192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015895058.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895057.10.0agamous-like MADS-box protein AGL30
RefseqXP_015895058.10.0agamous-like MADS-box protein AGL30
RefseqXP_015895059.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-108AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A2I4GMX60.0A0A2I4GMX6_JUGRE; agamous-like MADS-box protein AGL30 isoform X5
STRINGXP_008339884.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.16e-86AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]