PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 109aa MW: 12626.3 Da PI: 9.0266 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.4 | 2.2e-12 | 11 | 99 | 10 | 94 |
HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 + ++r+++p +f + ++g +++ ++ ++ +g ++++ l++r++ g+ ++ ++GW++Fvk+ng+ +gD+++F d++ +ef ++ XP_015895056.1 11 TDYKSRFSVPTEFHSLINGC-HGGAEIAIRAyDTGFRYDFVLSVRNGAGQiyqkpVFQQRGWQKFVKENGVLTGDTITFWKDQQtEEF--MI 99 4445689******9777444.34557777776799*********999999777767777********************965543443..44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.234 | 2 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.41E-11 | 6 | 100 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.1E-9 | 6 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-10 | 10 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-9 | 13 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MAVLSKEVSE TDYKSRFSVP TEFHSLINGC HGGAEIAIRA YDTGFRYDFV LSVRNGAGQI 60 YQKPVFQQRG WQKFVKENGV LTGDTITFWK DQQTEEFMIR SVRPFKNYM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015895056.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |