PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015894986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ERF | ||||||||
Protein Properties | Length: 391aa MW: 43972.6 Da PI: 4.3671 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d ++ r +lg+++taeeAa+a+++a+ l+g XP_015894986.1 48 RYVGVRQRP-SGRWVAEIKDtI----QKIRLWLGTYDTAEEAARAYDEAACLLRG 97 79*******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.38E-32 | 47 | 104 | No hit | No description |
Pfam | PF00847 | 5.3E-14 | 48 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-19 | 48 | 105 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-34 | 48 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.954 | 48 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-27 | 48 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-8 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-8 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MVKKRKGSEE EEEKESSTND GNMGWDQVME AASAASAALC ETRRARKRYV GVRQRPSGRW 60 VAEIKDTIQK IRLWLGTYDT AEEAARAYDE AACLLRGANT RTNFWPCSPS PNSRPALPSR 120 IANLLLLRLK ARNNACATMS SSLPTNQVQE QAIQAKDNMF DSFFNVQEYC NVNEDSDNVS 180 NMVSDITTSD YMTESFESNF PGTNDRDHPG ASGTFENDSI SFDDTNHCEG KKEKEEEEED 240 LNTGLVDLRF VDMVESSTYF YPFEIAEEMV DPLDMENSDH HESSILGGTM KRMMYERKFS 300 ASLYAFHGIS ECMKLKLGSE LAEGAERSGQ LSKLQNNSNN EEEKRKEDDI FQEGVQEQIG 360 VLQSPTGIES LSSESGELYL WSKLNLLLSS L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015894986.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894986.1 | 0.0 | ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A2P5G0B5 | 1e-138 | A0A2P5G0B5_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_009360645.1 | 1e-101 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-19 | related to AP2 11 |