PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015894915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 21428.4 Da PI: 9.7727 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.2 | 3.4e-21 | 16 | 59 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + enksn+qvtfskRr g++ KA ELSvLC+aeva i+fs++ k XP_015894915.1 16 KLENKSNKQVTFSKRRVGLFNKAGELSVLCGAEVAAIVFSPNSK 59 679*************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.53 | 7 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.0E-26 | 7 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-22 | 8 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-19 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-20 | 17 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-19 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-19 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MATKKTQGRQ KIEIKKLENK SNKQVTFSKR RVGLFNKAGE LSVLCGAEVA AIVFSPNSKR 60 RRQRPCIYST TSSNTNTSNS SEAAAAAMAS AAAAAAGREL VPVGEFNREY REAMKELEVE 120 KKRAEEVKLA AEEKKVAWSE RFWWEEETVD GMRLGELEQF MAALKEMRRE VVNRTEELMK 180 SCSAASNDAV LA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015894915.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866170.1 | 1e-46 | agamous-like MADS-box protein AGL62 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-19 | AGAMOUS-like 62 |