PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894738.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 462aa    MW: 52121.6 Da    PI: 6.4255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12295338755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+ri+++++ Lr+l+Pk      +K++ a+iL  Ave+I +Lq
  XP_015894738.1 295 VTERNRRNRIKDGLFALRSLVPKI-----TKMDRASILGDAVEFIEELQ 338
                     57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-1711152IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.41E-15286353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.83E-9286334No hitNo description
PROSITE profilePS5088814.329288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-14294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-15295354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10296338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MKALELAVEW LRPIVRVQKW DYCVVWKLGD DPSRYIEWLD CCCGGGYEIS NVKEEIDELT  60
PLCRDSCLKH RVRTKACEAL SQLPLFMPLY SGIHTEVVIS TEPSWISQID AMDSNASNMD  120
SVGTRVFIPI MGGLIELYAI KHIPKDQKTL ELILYQYNLS LEREMMSAHS CTDVSRNELL  180
DKLSEEYIQK CSRSLHLLTF NQVFPSLNQP GSYASTEGSS SSSNPSNEHL NFNSNCHLPS  240
KQSEKSSGSK NPECNEILVK KQNVLVSECG IVAQNHNGKV LKRKERENYH SKNLVTERNR  300
RNRIKDGLFA LRSLVPKITK MDRASILGDA VEFIEELQKK EKELLEELRI LEEEDCQKSK  360
GDIKISQSKS DIGCSSCLPG PDIRTEVEVN QIGKKDCYIK LFCKEKKGGF VRLIEAIDSL  420
GLQVVNANVT TFNGAVQNIL EVEANKDIQA NNLKDSLIKL TG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894738.20.0transcription factor bHLH90
TrEMBLA0A2N9IQT01e-156A0A2N9IQT0_FAGSY; Uncharacterized protein
STRINGcassava4.1_031741m1e-135(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-68bHLH family protein