PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894702.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family YABBY
Protein Properties Length: 218aa    MW: 24823.9 Da    PI: 5.5553
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY211.43.1e-6561672169
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 
                     + f+ seq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCt llsvn++kas    +lla+ s+             +++ee +++ +++ +++
  XP_015894702.1   6 HFFDLSEQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTGLLSVNMMKASfvplHLLASLSQ------------VEKKEEVYNMEEVEADNP 88 
                     67999********************************************9998444444444443............334455556666666666 PP

           YABBY  93 stsvsseklsened.eevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                     +  +s    s+ne+ +++  v + v++PPekrqr+Psayn fi+eei+r+ka+nP+++h+eafs+aaknWahfP+i f+
  XP_015894702.1  89 MDRRSPAICSDNEEgDNIVSVNHiVNKPPEKRQRAPSAYNHFIREEIRRLKAENPKMAHKEAFSTAAKNWAHFPPIEFK 167
                     6665555555544414444454459***************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.1E-6310167IPR006780YABBY protein
SuperFamilySSF470953.01E-8112163IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-5114163IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSTLNHFFDL SEQICYVQCG FCTTILLVSV PCSSLSMVVT VRCGHCTGLL SVNMMKASFV  60
PLHLLASLSQ VEKKEEVYNM EEVEADNPMD RRSPAICSDN EEGDNIVSVN HIVNKPPEKR  120
QRAPSAYNHF IREEIRRLKA ENPKMAHKEA FSTAAKNWAH FPPIEFKGDG ESCSQREENL  180
ASWDSDVTVN EVHEEGNFFH ERKVQRNSEN EQRHPLSE
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894702.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894702.11e-163axial regulator YABBY 4 isoform X1
SwissprotQ9LDT31e-71YAB4_ARATH; Axial regulator YABBY 4
TrEMBLM5XQH81e-99M5XQH8_PRUPE; Uncharacterized protein
STRINGEMJ277811e-100(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.15e-74YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]