PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015894702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | YABBY | ||||||||
Protein Properties | Length: 218aa MW: 24823.9 Da PI: 5.5553 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 211.4 | 3.1e-65 | 6 | 167 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 + f+ seq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCt llsvn++kas +lla+ s+ +++ee +++ +++ +++ XP_015894702.1 6 HFFDLSEQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTGLLSVNMMKASfvplHLLASLSQ------------VEKKEEVYNMEEVEADNP 88 67999********************************************9998444444444443............334455556666666666 PP YABBY 93 stsvsseklsened.eevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + +s s+ne+ +++ v + v++PPekrqr+Psayn fi+eei+r+ka+nP+++h+eafs+aaknWahfP+i f+ XP_015894702.1 89 MDRRSPAICSDNEEgDNIVSVNHiVNKPPEKRQRAPSAYNHFIREEIRRLKAENPKMAHKEAFSTAAKNWAHFPPIEFK 167 6665555555544414444454459***************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.1E-63 | 10 | 167 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.01E-8 | 112 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.9E-5 | 114 | 163 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSTLNHFFDL SEQICYVQCG FCTTILLVSV PCSSLSMVVT VRCGHCTGLL SVNMMKASFV 60 PLHLLASLSQ VEKKEEVYNM EEVEADNPMD RRSPAICSDN EEGDNIVSVN HIVNKPPEKR 120 QRAPSAYNHF IREEIRRLKA ENPKMAHKEA FSTAAKNWAH FPPIEFKGDG ESCSQREENL 180 ASWDSDVTVN EVHEEGNFFH ERKVQRNSEN EQRHPLSE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015894702.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894702.1 | 1e-163 | axial regulator YABBY 4 isoform X1 | ||||
Swissprot | Q9LDT3 | 1e-71 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | M5XQH8 | 1e-99 | M5XQH8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ27781 | 1e-100 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-74 | YABBY family protein |
Publications ? help Back to Top | |||
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