PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015894512.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

GRAS

Protein Properties

Length: 519aa MW: 58923.2 Da PI: 6.5108

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015894512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.2	9.3e-112	141	517	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevsPilk 92 lv++L++cAeav+ +d++ a alL++l+ +a g+++qR+a++f+++L+ rl + v+ l++ + + +++ s ++ al+l +e++P ++ XP_015894512.1 141 LVQQLIACAEAVACRDKSFALALLSELRPNALVFGTSFQRVASCFVQGLSDRLEHeLVHPLVSVGVTAKMMNTTanSPDKDEALRLVYEICPQIQ 235 689*************************************************9545555554433333222235999999********* PP GRAS 93 fshltaNqaIleavegeervHiiDfdi....sqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvp.fefn 179 f+h++aN Ilea+ege++vH++D+++ s+G QW +L+q+La+R+ + +lRiTgvg+ + e+lee+g+ L+ +A +l++ f+f+ XP_015894512.1 236 FGHFIANASILEAFEGERCVHVVDLGMslglSHGYQWRNLMQSLANRTrgrVPLQRLRITGVGN----RGERLEEIGKELEVYAGSLKLGfFQFS 326 ********************87522226899********96444456*****....9****************736* PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 ++ +le+l++e+L ++ gE+l++n++l+lh + +es + ++Lk++ +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a XP_015894512.1 327 MVEIGNLENLKPEDLGLSDGEVLVINSILHLHCVAKESKGALN---SILKMLHRLSPKLMVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAM 418 9999**************************988877777...9******************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368 lp+ + r+k+E++ +++ei+n+v+ceg++r+erhet+ +Wr+r+++aGF++ pl+ ++++ k l+kv+ ++gyrv ee+g+l+lgWk++p++ XP_015894512.1 419 LPKYDTRRAKIEQFHFAEEIKNIVSCEGQARVERHETMDQWRRRMSRAGFQQSPLK--MMTKTKQWLEKVSaFEGYRVMEEKGCLFLGWKSKPII 511 **************************************************96..7889999**9******************* PP GRAS 369 svSaWr 374 s+S+W+ XP_015894512.1 512 SASCWK 517 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.025	115	498	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-109	141	517	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MMPPYSCQKT EVYIDEQKYS DPQMVLDPNL SSMAYLPSLP TLDNNNSSFC FFSSSLEETR 60 NHESQKLAPL TDYHESFESS TPFSSGRGST SGNSNSFQKL HFRDHVWAYT QRFLAVEAMD 120 MGFNEYEESV EEERSRDGMK LVQQLIACAE AVACRDKSFA LALLSELRPN ALVFGTSFQR 180 VASCFVQGLS DRLEHELVHP LVSVGVTAKM MNTTANSPDK DEALRLVYEI CPQIQFGHFI 240 ANASILEAFE GERCVHVVDL GMSLGLSHGY QWRNLMQSLA NRTRGRVPLQ RLRITGVGNR 300 GERLEEIGKE LEVYAGSLKL GFFQFSMVEI GNLENLKPED LGLSDGEVLV INSILHLHCV 360 AKESKGALNS ILKMLHRLSP KLMVLVEQDS SHNGPFFLGR FMEALHYYSA IFDSLDAMLP 420 KYDTRRAKIE QFHFAEEIKN IVSCEGQARV ERHETMDQWR RRMSRAGFQQ SPLKMMTKTK 480 QWLEKVSAFE GYRVMEEKGC LFLGWKSKPI ISASCWKSS

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MMPPYSCQKT EVYIDEQKYS DPQMVLDPNL SSMAYLPSLP TLDNNNSSFC FFSSSLEETR  60
NHESQKLAPL TDYHESFESS TPFSSGRGST SGNSNSFQKL HFRDHVWAYT QRFLAVEAMD  120
MGFNEYEESV EEERSRDGMK LVQQLIACAE AVACRDKSFA LALLSELRPN ALVFGTSFQR  180
VASCFVQGLS DRLEHELVHP LVSVGVTAKM MNTTANSPDK DEALRLVYEI CPQIQFGHFI  240
ANASILEAFE GERCVHVVDL GMSLGLSHGY QWRNLMQSLA NRTRGRVPLQ RLRITGVGNR  300
GERLEEIGKE LEVYAGSLKL GFFQFSMVEI GNLENLKPED LGLSDGEVLV INSILHLHCV  360
AKESKGALNS ILKMLHRLSP KLMVLVEQDS SHNGPFFLGR FMEALHYYSA IFDSLDAMLP  420
KYDTRRAKIE QFHFAEEIKN IVSCEGQARV ERHETMDQWR RRMSRAGFQQ SPLKMMTKTK  480
QWLEKVSAFE GYRVMEEKGC LFLGWKSKPI ISASCWKSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-53	127	516	5	378	Protein SCARECROW
5b3h_A	4e-53	127	516	4	377	Protein SCARECROW
5b3h_D	4e-53	127	516	4	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015894512.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894512.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A067H3B1	0.0	A0A067H3B1_CITSI; Uncharacterized protein
STRING	XP_006438138.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	9e-73	RGA-like protein 3