PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015894480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | ARR-B | ||||||||
Protein Properties | Length: 590aa MW: 66782.5 Da PI: 5.7897 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77 | 2.4e-24 | 200 | 253 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_015894480.1 200 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 81 | 4e-27 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+k y ev+++ +++al ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G XP_015894480.1 20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 112 89*********************.***************999999**********************6644.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ ++el++ XP_015894480.1 113 ACDYLLKPIRMKELRN 128 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.5E-44 | 17 | 142 | No hit | No description |
SuperFamily | SSF52172 | 2.99E-35 | 17 | 141 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 6.9E-32 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.143 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.4E-24 | 20 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.34E-30 | 21 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-28 | 198 | 258 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.3E-17 | 198 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-21 | 200 | 253 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 202 | 252 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MENGFSSPRN NDTFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA RDALSLLRER 60 KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP 120 IRMKELRNIW QHVFRKKIHE IRDMESHESI DAVQMMRNGT DHSDDVQFLS MEDLTSVKKR 180 KDIENKHDDK DFSDTSSTKK ARVVWSVDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT 240 RENVASHLQK YRLYLSRLQK EKENDLKSSF VAMKHNDPKD PQGSFGLQNL MNTHQNDVVN 300 GGYKFSVNNV LVQNVDPTNH ESESIVSEPT TEPKRASASR LPDPLKTKNS QMVFNHSFAP 360 LESEVNLTAF GSTIPTNYSW SEVPDIQFKQ EHKPLIQPEN GFSKLPVLDP PPHIHVDQLQ 420 SIPSISSKPT TIERGITGPI KSKPQNIEYG SNQVNCVSST VSTIDSFQIR PDMANHQPLE 480 PIYTNSSSMK TQIFNLSCLT DLESTQRTQT LGNGSPYVSF DDELPVLFQN DCYGMNLGLH 540 NVEFSEYNAA GLINEVPSHL CDSLRIGYEY PCDPTEYSVI DQGLFIHSMT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-17 | 196 | 258 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015894480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894480.1 | 0.0 | two-component response regulator ARR11 | ||||
TrEMBL | A0A2P5F0W5 | 0.0 | A0A2P5F0W5_TREOI; Two-component response regulator | ||||
STRING | XP_010100306.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3999 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-127 | response regulator 11 |