PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015894319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | SBP | ||||||||
Protein Properties | Length: 479aa MW: 52124.5 Da PI: 7.567 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.1 | 4.4e-42 | 183 | 260 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+h++Ce hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+ XP_015894319.1 183 RCQVEGCNLDLSSAKDYHRKHRICESHSKSPKVIVGGLERRFCQQCSRFHPLSEFDEKKRSCRRRLSDHNARRRKPQP 260 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-34 | 178 | 245 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 33.129 | 181 | 258 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.94E-40 | 182 | 263 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.8E-33 | 184 | 257 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MEWNTKPSLL WELENLLEFD VKATENPKKL QLTDCCVEGD RGISSGSFNS PGDGGGSGGT 60 GGYGSDLGHT SSKSSKSASI SSPSFGESKT SKFSIEAFEG HPKDFSGNKE SAEVEPSGSS 120 PTPEISAGSV EPLLSLKLGK RMYFEDASAG NNTKTSSLAV DPTSSPMTTK RCKSSCQNAL 180 VPRCQVEGCN LDLSSAKDYH RKHRICESHS KSPKVIVGGL ERRFCQQCSR FHPLSEFDEK 240 KRSCRRRLSD HNARRRKPQP EAVRLNPTRL SSLYDGQQQM NIVFDQSSRL YTRNAVNLTW 300 DGTDSSKLGE TKEFLSKPAK AGGATGQLHL LNNDMPSAVT TLYHDSGGLS PSKGTASEVL 360 NQGLEESVIS SNLDTTQDLH RALSLLSTSS WGSCGTKSVS QGNPNHINHT TMPQPSNTMH 420 AISQGLPFGS EYWQSEQLSL DNPSHISHPR SNSSSSNHFQ DLNLFRGPYE SGFYPNQFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-28 | 184 | 257 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 256 | KKRSCRRRLSDHNARRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015894319.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894315.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_015894316.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_015894317.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_015894319.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A2P5C1U9 | 0.0 | A0A2P5C1U9_TREOI; SBP-box transcription factor | ||||
STRING | XP_010102696.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 9e-72 | squamosa promoter binding protein-like 2 |