PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894287.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 343aa    MW: 37911.3 Da    PI: 8.3088
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.1e-4143119278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC +dls++++y+rrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  XP_015894287.1  43 CLVDGCISDLSKCRDYYRRHKVCELHSKTPKVTIGGHEQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 119
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-3436104IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.5940117IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.05E-3841122IPR004333Transcription factor, SBP-box
PfamPF031101.7E-3043116IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEDGIKAKLE DAGNESSSSK SSSSTTLLKR SRAPNNGTQV PSCLVDGCIS DLSKCRDYYR  60
RHKVCELHSK TPKVTIGGHE QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPE  120
SMSINSGRFL STYQGARVLP FCGSQIFSSH AMSSALAGAR VGDVKIENET MLFDSHSQLG  180
GNKKQSFPEF MTQIYKGGKQ LSSLQSTNCN PTLPEASVCS QQHLNANSAF WNAGNNQKVF  240
PNWLYRDSSE SDCALSLLSS TPTDNTKEIG LSHFMGSNPI PQAQPLIPSM HYNGLEMVGE  300
PATSILFTDG SDSANFHCQE MHKIRPDGSS SSGPHQKLSF SWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27431161184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199116KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894287.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894286.10.0squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_024933672.10.0squamosa promoter-binding-like protein 16 isoform X1
TrEMBLA0A2P5C1R11e-128A0A2P5C1R1_TREOI; SBP-box transcription factor
STRINGVIT_01s0010g03910.t011e-116(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-50SBP family protein