PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015894286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | SBP | ||||||||
Protein Properties | Length: 354aa MW: 39239.8 Da PI: 8.3064 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.9 | 2.3e-41 | 54 | 130 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC +dls++++y+rrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_015894286.1 54 CLVDGCISDLSKCRDYYRRHKVCELHSKTPKVTIGGHEQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 130 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-34 | 47 | 115 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.59 | 51 | 128 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.1E-38 | 52 | 133 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-30 | 54 | 127 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MTESKLGRFY DMEDGIKAKL EDAGNESSSS KSSSSTTLLK RSRAPNNGTQ VPSCLVDGCI 60 SDLSKCRDYY RRHKVCELHS KTPKVTIGGH EQRFCQQCSR FHSLEEFDEG KRSCRKRLDG 120 HNRRRRKPQP ESMSINSGRF LSTYQGARVL PFCGSQIFSS HAMSSALAGA RVGDVKIENE 180 TMLFDSHSQL GGNKKQSFPE FMTQIYKGGK QLSSLQSTNC NPTLPEASVC SQQHLNANSA 240 FWNAGNNQKV FPNWLYRDSS ESDCALSLLS STPTDNTKEI GLSHFMGSNP IPQAQPLIPS 300 MHYNGLEMVG EPATSILFTD GSDSANFHCQ EMHKIRPDGS SSSGPHQKLS FSWD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-27 | 54 | 127 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 127 | KRSCRKRLDGHNRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015894286.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894286.1 | 0.0 | squamosa promoter-binding-like protein 16 isoform X1 | ||||
Refseq | XP_024933672.1 | 0.0 | squamosa promoter-binding-like protein 16 isoform X1 | ||||
TrEMBL | A0A2P5C1R1 | 1e-128 | A0A2P5C1R1_TREOI; SBP-box transcription factor | ||||
STRING | VIT_01s0010g03910.t01 | 1e-118 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-50 | SBP family protein |