PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894286.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family SBP
Protein Properties Length: 354aa    MW: 39239.8 Da    PI: 8.3064
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.3e-4154130278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC +dls++++y+rrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  XP_015894286.1  54 CLVDGCISDLSKCRDYYRRHKVCELHSKTPKVTIGGHEQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 130
                     **************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-3447115IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.5951128IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.1E-3852133IPR004333Transcription factor, SBP-box
PfamPF031101.7E-3054127IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTESKLGRFY DMEDGIKAKL EDAGNESSSS KSSSSTTLLK RSRAPNNGTQ VPSCLVDGCI  60
SDLSKCRDYY RRHKVCELHS KTPKVTIGGH EQRFCQQCSR FHSLEEFDEG KRSCRKRLDG  120
HNRRRRKPQP ESMSINSGRF LSTYQGARVL PFCGSQIFSS HAMSSALAGA RVGDVKIENE  180
TMLFDSHSQL GGNKKQSFPE FMTQIYKGGK QLSSLQSTNC NPTLPEASVC SQQHLNANSA  240
FWNAGNNQKV FPNWLYRDSS ESDCALSLLS STPTDNTKEI GLSHFMGSNP IPQAQPLIPS  300
MHYNGLEMVG EPATSILFTD GSDSANFHCQ EMHKIRPDGS SSSGPHQKLS FSWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-27541271184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110127KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894286.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894286.10.0squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_024933672.10.0squamosa promoter-binding-like protein 16 isoform X1
TrEMBLA0A2P5C1R11e-128A0A2P5C1R1_TREOI; SBP-box transcription factor
STRINGVIT_01s0010g03910.t011e-118(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-50SBP family protein