PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015894227.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 904aa MW: 103949 Da PI: 8.256

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015894227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.7	6.3e-26	98	205	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+eYAk+vGF v +++s++s+ +g++++++f C+++g+++e+ ++ +++ r +r+ +t+Cka+++vk+++dg+w + XP_015894227.1 98 SFYKEYAKSVGFAVIIKASRRSRISGKFIDAKFACTRYGNKQESISAetpegvsmegltifpikRKRGRINRSWAKTDCKACMHVKRRQDGRWII 192 5****************************************999999*********99999999********************* PP FAR1 79 tkleleHnHelap 91 +++ +eHnHe++p XP_015894227.1 193 HTCIKEHNHEIFP 205 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-24	98	205	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-29	324	417	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.384	604	640	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-5	613	638	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.3E-5	615	642	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 904 aa Download sequence Send to blast
MDIDLEQPSG GYHKEDSAPN VSVDTVDGGD EGFYRDQGIV SSPGFVRKCK KDTNPNVNKR 60 ALDGKSRSYA GDVINLNSSK TLEPHDGMEF ESKEEAFSFY KEYAKSVGFA VIIKASRRSR 120 ISGKFIDAKF ACTRYGNKQE SISAETPEGV SMEGLTIFPI KRKRGRINRS WAKTDCKACM 180 HVKRRQDGRW IIHTCIKEHN HEIFPDQAYY FRGHRNLDLS TSNVDALHAI RARTKRMYVT 240 MSRQSGNYKK ADNQKGAVSN QLQARQNLAL EEGDAYAMLD HFISMQDENP NFFYAIDLNE 300 EQQLRNVFWV DSKGRLDYCN FNDVVFFDIT YIKNEYKLPF APFIGVNHHC QFLLLGCALL 360 ADETQSTYVW LMRAWLRAMG GRAPKVILTG QDKALKEAIS EVFHDSRHCF CLWHIMNKIP 420 EKLGYVTRQH EKFMNKFNKC IFKSWTKEQF EERWWKMINR FNLRDDLWLQ SLYEDREHWI 480 PTYMKDIFLA GMSTVQRSES VNCFLDKYMQ RKTTLKEFLE QHRAILREKS EEEAKADFET 540 WHKQPALKSP SPFGKQMAAI YTHAIFKKFQ IEVLGVVACH PKKETEDRTN KIFTVQDFEE 600 NQNFIVEWNE TTSDISCLCR SFEFNGFLCR HMMIVLQMSG VHSIPSQYIL QRWTKDAKSR 660 QAPREGSRVV ESRVQRYNNL CQRAFTLSDE GSLSQESYYI AFNALEEALR KCESINNSIQ 720 DVIEPNSPTT HGPPGCQGVN QSNSISKSNK KNGASKKGQG HSEPEVINVE NHDGWQQMGH 780 SNLRARVIDC SYESQESVQG MDQLHSRAPN LDGYFGSQQI VQGMSQLNSI APSRDDYYSS 840 QHSVQGLGRL HLRSQTIPSS FSIQDSLHDV VSKLSRGIFG FSLPALMGSA FRTSLIWDPR 900 SCMA

Sequence ? help Back to Top

Protein Sequence Length: 904 aa Download sequence Send to blast

MDIDLEQPSG GYHKEDSAPN VSVDTVDGGD EGFYRDQGIV SSPGFVRKCK KDTNPNVNKR  60
ALDGKSRSYA GDVINLNSSK TLEPHDGMEF ESKEEAFSFY KEYAKSVGFA VIIKASRRSR  120
ISGKFIDAKF ACTRYGNKQE SISAETPEGV SMEGLTIFPI KRKRGRINRS WAKTDCKACM  180
HVKRRQDGRW IIHTCIKEHN HEIFPDQAYY FRGHRNLDLS TSNVDALHAI RARTKRMYVT  240
MSRQSGNYKK ADNQKGAVSN QLQARQNLAL EEGDAYAMLD HFISMQDENP NFFYAIDLNE  300
EQQLRNVFWV DSKGRLDYCN FNDVVFFDIT YIKNEYKLPF APFIGVNHHC QFLLLGCALL  360
ADETQSTYVW LMRAWLRAMG GRAPKVILTG QDKALKEAIS EVFHDSRHCF CLWHIMNKIP  420
EKLGYVTRQH EKFMNKFNKC IFKSWTKEQF EERWWKMINR FNLRDDLWLQ SLYEDREHWI  480
PTYMKDIFLA GMSTVQRSES VNCFLDKYMQ RKTTLKEFLE QHRAILREKS EEEAKADFET  540
WHKQPALKSP SPFGKQMAAI YTHAIFKKFQ IEVLGVVACH PKKETEDRTN KIFTVQDFEE  600
NQNFIVEWNE TTSDISCLCR SFEFNGFLCR HMMIVLQMSG VHSIPSQYIL QRWTKDAKSR  660
QAPREGSRVV ESRVQRYNNL CQRAFTLSDE GSLSQESYYI AFNALEEALR KCESINNSIQ  720
DVIEPNSPTT HGPPGCQGVN QSNSISKSNK KNGASKKGQG HSEPEVINVE NHDGWQQMGH  780
SNLRARVIDC SYESQESVQG MDQLHSRAPN LDGYFGSQQI VQGMSQLNSI APSRDDYYSS  840
QHSVQGLGRL HLRSQTIPSS FSIQDSLHDV VSKLSRGIFG FSLPALMGSA FRTSLIWDPR  900
SCMA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015894227.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894227.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X3
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2N9ITN8	0.0	A0A2N9ITN8_FAGSY; Uncharacterized protein
STRING	VIT_01s0011g01470.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]