PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015894226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 917aa MW: 105413 Da PI: 8.1412 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.6 | 6.4e-26 | 98 | 205 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+eYAk+vGF v +++s++s+ +g++++++f C+++g+++e+ ++ +++ r +r+ +t+Cka+++vk+++dg+w + XP_015894226.1 98 SFYKEYAKSVGFAVIIKASRRSRISGKFIDAKFACTRYGNKQESISAetpegvsmegltifpikRKRGRINRSWAKTDCKACMHVKRRQDGRWII 192 5******************************************999999*************99999999************************* PP FAR1 79 tkleleHnHelap 91 +++ +eHnHe++p XP_015894226.1 193 HTCIKEHNHEIFP 205 **********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.6E-24 | 98 | 205 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-29 | 324 | 417 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.384 | 604 | 640 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.9E-5 | 613 | 638 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.3E-5 | 615 | 642 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 917 aa Download sequence Send to blast |
MDIDLEQPSG GYHKEDSAPN VSVDTVDGGD EGFYRDQGIV SSPGFVRKCK KDTNPNVNKR 60 ALDGKSRSYA GDVINLNSSK TLEPHDGMEF ESKEEAFSFY KEYAKSVGFA VIIKASRRSR 120 ISGKFIDAKF ACTRYGNKQE SISAETPEGV SMEGLTIFPI KRKRGRINRS WAKTDCKACM 180 HVKRRQDGRW IIHTCIKEHN HEIFPDQAYY FRGHRNLDLS TSNVDALHAI RARTKRMYVT 240 MSRQSGNYKK ADNQKGAVSN QLQARQNLAL EEGDAYAMLD HFISMQDENP NFFYAIDLNE 300 EQQLRNVFWV DSKGRLDYCN FNDVVFFDIT YIKNEYKLPF APFIGVNHHC QFLLLGCALL 360 ADETQSTYVW LMRAWLRAMG GRAPKVILTG QDKALKEAIS EVFHDSRHCF CLWHIMNKIP 420 EKLGYVTRQH EKFMNKFNKC IFKSWTKEQF EERWWKMINR FNLRDDLWLQ SLYEDREHWI 480 PTYMKDIFLA GMSTVQRSES VNCFLDKYMQ RKTTLKEFLE QHRAILREKS EEEAKADFET 540 WHKQPALKSP SPFGKQMAAI YTHAIFKKFQ IEVLGVVACH PKKETEDRTN KIFTVQDFEE 600 NQNFIVEWNE TTSDISCLCR SFEFNGFLCR HMMIVLQMSG VHSIPSQYIL QRWTKDAKSR 660 QAPREGSRVV ESRVQRYNNL CQRAFTLSDE GSLSQESYYI AFNALEEALR KCESINNSIQ 720 DVIEPNSPTT HGPPGCQGVN QSNSISKSNK KNGASKKGQG HSEPEVINVE NHDGWQQMGH 780 SNLRARVIDC SYESQESVQG MDQLHSRAPN LDGYFGSQQI VQGMSQLNSI APSRDDYYSS 840 QHSVQGLGHL NSIAPIHDSH YLTQQRAHGM GRLHLRSQTI PSSFSIQDSL HDVDQSNMGS 900 SQLHGMTSKH LLSKNLS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015894226.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894226.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | F6HF67 | 0.0 | F6HF67_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g01470.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |