PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015894173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GATA | ||||||||
Protein Properties | Length: 297aa MW: 32058.4 Da PI: 6.3122 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48 | 1.8e-15 | 216 | 252 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg+ XP_015894173.1 216 CQHCGISEkcTPMMRRGPEGPRTLCNACGLMWANKGT 252 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 9.8E-10 | 86 | 121 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.06 | 86 | 121 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.6E-11 | 91 | 119 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.0E-15 | 141 | 183 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.185 | 141 | 183 | IPR010402 | CCT domain |
SMART | SM00401 | 1.8E-13 | 210 | 263 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.209 | 210 | 271 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-12 | 211 | 260 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.5E-15 | 215 | 257 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.4E-13 | 216 | 252 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 216 | 243 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.86E-14 | 216 | 258 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MEGIHGNDVR MHMSDAQQHH QVHLQYVQEH DHHVLHHLSN GSGVAEGNDD GNCGDGVADG 60 TDVVEGTIQS NLGNLSDTRS SMVDLGGDSG DQLTLSFQGQ VYVFDSVAPE KVQAVLLLLR 120 GGEVPPSVPA VPISAQHNNQ RVASLIRFRE KRKERNFDKK IRYTVRKEVA LRMQRNKGQF 180 TSSKCNNDDS ASAATSMGTN DWCQDGNGGQ HSEILCQHCG ISEKCTPMMR RGPEGPRTLC 240 NACGLMWANK GTLRDLSKAV SQSGQNTSTS RNEAMESGNV EADQMVLGTS GNGGDSA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015894173.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894173.1 | 0.0 | GATA transcription factor 28-like isoform X2 | ||||
Swissprot | Q8H1G0 | 1e-113 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A371F4E2 | 1e-135 | A0A371F4E2_MUCPR; GATA transcription factor 28 | ||||
STRING | XP_007142122.1 | 1e-131 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-110 | ZIM-LIKE 2 |