PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015894172.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 310aa    MW: 33425.9 Da    PI: 6.4401
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015894172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16229265135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  XP_015894172.1 229 CQHCGISEkcTPMMRRGPEGPRTLCNACGLMWANKGT 265
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.8E-1086121IPR010399Tify domain
PROSITE profilePS5132014.0686121IPR010399Tify domain
PfamPF062001.7E-1191119IPR010399Tify domain
PfamPF062031.1E-15154196IPR010402CCT domain
PROSITE profilePS5101713.185154196IPR010402CCT domain
SMARTSM004011.8E-13223276IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.209223284IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-12224273No hitNo description
Gene3DG3DSA:3.30.50.104.8E-15228270IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.5E-13229265IPR000679Zinc finger, GATA-type
CDDcd002022.95E-14229271No hitNo description
PROSITE patternPS003440229256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEGIHGNDVR MHMSDAQQHH QVHLQYVQEH DHHVLHHLSN GSGVAEGNDD GNCGDGVADG  60
TDVVEGTIQS NLGNLSDTRS SMVDLGGDSG DQLTLSFQGQ VYVFDSVAPE KVQAVLLLLR  120
GGEVPPSVPA VPISAQHNNQ GLAATPQRFT VPQRVASLIR FREKRKERNF DKKIRYTVRK  180
EVALRMQRNK GQFTSSKCNN DDSASAATSM GTNDWCQDGN GGQHSEILCQ HCGISEKCTP  240
MMRRGPEGPR TLCNACGLMW ANKGTLRDLS KAVSQSGQNT STSRNEAMES GNVEADQMVL  300
GTSGNGGDSA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015894172.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894171.10.0GATA transcription factor 28-like isoform X1
RefseqXP_015894172.10.0GATA transcription factor 28-like isoform X1
RefseqXP_024934144.10.0GATA transcription factor 28-like isoform X1
RefseqXP_024934145.10.0GATA transcription factor 28-like isoform X1
SwissprotQ8H1G01e-122GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A371F4E21e-146A0A371F4E2_MUCPR; GATA transcription factor 28
STRINGXP_007142122.11e-141(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-119ZIM-LIKE 2