PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893945.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TCP
Protein Properties Length: 172aa    MW: 19280 Da    PI: 10.3675
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP48.82.7e-1572145379
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesss 79 
                      +kdr  ki   +g+ dR v ls+ +a rf+d+ d+L +  + k + WL++ a  ai +l+++   s+++a+      ++
  XP_015893945.1  72 SGKDRCGKILIGKGLNDRKVKLSVATASRFYDILDRLDYNHPEKDVKWLIRVASDAIYKLPSLptySFPDAT------EQ 145
                     579***********************************************************9444333332......22 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-1772155IPR005333Transcription factor, TCP
PROSITE profilePS5136912.90273131IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MASRKDRRFI AKVALSRRYV VFQSSNFLAN VGETSKQYCG GLQVHRPKSG ANQLLHGLNQ  60
SSRIIKASRS SSGKDRCGKI LIGKGLNDRK VKLSVATASR FYDILDRLDY NHPEKDVKWL  120
IRVASDAIYK LPSLPTYSFP DATEQLSDNK RPSVELKLID LDEGSVSQVT HE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1279132255Putative transcription factor PCF6
5zkt_B3e-1279132255Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893945.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893945.11e-124transcription factor TCP2-like
SwissprotQ93V437e-24TCP2_ARATH; Transcription factor TCP2
TrEMBLW9QCB85e-31W9QCB8_9ROSA; Uncharacterized protein
STRINGXP_010086998.18e-32(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-21TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]