PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015893916.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 676aa MW: 77293.2 Da PI: 9.354 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36 | 1.2e-11 | 451 | 495 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e+L e+F++n ps++ +e L+k+lgL+ ++V+ WF+N R+ XP_015893916.1 451 HNAVERLREVFAENELPSRAVKENLSKELGLDPEKVSKWFKNARY 495 67899**************************************97 PP | |||||||
2 | PHD | 40.5 | 6.1e-14 | 209 | 264 | 1 | 51 |
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ d+ +++++lCd +C+++fH+kCl+++l++e++p g w+C+ C++k XP_015893916.1 209 FCAKCKLRDAfpDNDIILCDgTCNSAFHQKCLDPPLDTENIPPGdqGWFCRFCDCK 264 699999944455********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 2.66E-14 | 201 | 266 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.9E-12 | 205 | 264 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.416 | 207 | 264 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 2.5E-11 | 209 | 264 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 1.08E-29 | 209 | 261 | No hit | No description |
SMART | SM00249 | 4.1E-9 | 209 | 262 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 210 | 261 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 9.6E-13 | 437 | 494 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.471 | 440 | 500 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-10 | 442 | 504 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-10 | 443 | 505 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.57E-9 | 443 | 495 | No hit | No description |
Pfam | PF00046 | 3.5E-9 | 451 | 495 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MHTKRDSKIS HRKKHKPKLK SHIKTTGSSF SKRKDNESLN KRTRNGPTNR KLIGRKILHK 60 SPDTESSKKL SSLRLQSEKL AHGSCEGNGE TADGDIEIKK LRRRRKRKRR KLNVELDEAS 120 RLQRRTRYLL IKMKQEQSLI DAYSGEGWKG QSREKIKPEK ELQRANKQIL KCKLGIRDVI 180 RQLDLLSSVG SIEDSVIAPD GSVYHEHIFC AKCKLRDAFP DNDIILCDGT CNSAFHQKCL 240 DPPLDTENIP PGDQGWFCRF CDCKMEMLEA VNAHLGTHFS MNSNWQDVFK EEAAFPDGAN 300 SLLNPDEEWP SDDSEDDDYN PDRRENSCSI SGAATGDDVS DDELSSNSSA ASGESTDAEI 360 ICSRRQRRDV DYKKLYDEMF GKEALPYEQI SEDEDWGPAK KRRREKESDA ASTLMTLYES 420 DKKCSDVDVG EVERKLPQET RIRRSFFRIP HNAVERLREV FAENELPSRA VKENLSKELG 480 LDPEKVSKWF KNARYLALKT RKSLQAERQK LHSFTSGNSK DSGCENFNKD SADLVASEDT 540 STETVIHNPK DVKVSCQRKH RRTLSSPVKK RQPKESSVRL PANNSKETLE FSDDVSLKKL 600 LKARTKEKKK VNFITVGECR AAEEEMERLC KIKDRLENLK QKLLEFKNDK AKNSVKPSLN 660 GRSVIYVPVA ELREKA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 111 | KKLRRRRKRKRRKL |
2 | 101 | 107 | RRRRKRK |
3 | 102 | 110 | RRRKRKRRK |
4 | 103 | 108 | RRKRKR |
5 | 104 | 109 | RKRKRR |
6 | 104 | 110 | RKRKRRK |
7 | 104 | 111 | RKRKRRKL |
8 | 105 | 110 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015893916.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893916.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Swissprot | P48785 | 1e-165 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A2P5DLK4 | 0.0 | A0A2P5DLK4_PARAD; Octamer-binding transcription factor | ||||
STRING | EMJ25722 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-162 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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