PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015893793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 26037.9 Da PI: 8.4593 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.6 | 5.8e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl++y+s XP_015893793.1 9 KKIDNLTARQVTFSKRRRGLFKKAKELSILCDAEIALIVFSATGKLFDYAS 59 68***********************************************86 PP | |||||||
2 | K-box | 40.4 | 1.3e-14 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + e ++ ++ L +ei + +e+R++ Ge+L++L+l++L+qLe+ e +l+++ + K e ++++i+ l+kke +l e+n +L+k+ XP_015893793.1 81 QQSLELELENNAYNLLSNEIVERTNELRRMRGEELQELNLEDLKQLEKLAEGGLSRVIKIKGERIMKEIHSLKKKETQLLEDNYRLKKMA 170 556667777889999999999999**************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.857 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-30 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.05E-38 | 3 | 69 | No hit | No description |
PRINTS | PR00404 | 5.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.764 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.4E-10 | 90 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MTRQKIQIKK IDNLTARQVT FSKRRRGLFK KAKELSILCD AEIALIVFSA TGKLFDYASS 60 SMQQVIEKHN MHLENQDKLS QQSLELELEN NAYNLLSNEI VERTNELRRM RGEELQELNL 120 EDLKQLEKLA EGGLSRVIKI KGERIMKEIH SLKKKETQLL EDNYRLKKMA DTLRVQKDVR 180 QGQSSESIVT DICNSADPLQ DHIDSSDTSL KLGLVDCIQY FTIKLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_B | 1e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_C | 1e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_D | 1e-20 | 1 | 77 | 1 | 77 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015893793.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893790.1 | 1e-163 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_015893791.1 | 1e-163 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_015893792.1 | 1e-163 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_015893793.1 | 1e-163 | MADS-box protein JOINTLESS-like | ||||
Swissprot | Q9FUY6 | 1e-77 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A1U7ZZ56 | 7e-89 | A0A1U7ZZ56_NELNU; MADS-box protein SVP isoform X2 | ||||
STRING | XP_010254524.1 | 3e-89 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 6e-63 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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