PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893793.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26037.9 Da    PI: 8.4593
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.65.8e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl++y+s
  XP_015893793.1  9 KKIDNLTARQVTFSKRRRGLFKKAKELSILCDAEIALIVFSATGKLFDYAS 59
                    68***********************************************86 PP

2K-box40.41.3e-1481170998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +++ + e  ++ ++ L +ei +  +e+R++ Ge+L++L+l++L+qLe+  e +l+++ + K e ++++i+ l+kke +l e+n +L+k+ 
  XP_015893793.1  81 QQSLELELENNAYNLLSNEIVERTNELRRMRGEELQELNLEDLKQLEKLAEGGLSRVIKIKGERIMKEIHSLKKKETQLLEDNYRLKKMA 170
                     556667777889999999999999**************************************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-30284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002652.05E-38369No hitNo description
PRINTSPR004045.9E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.76486176IPR002487Transcription factor, K-box
PfamPF014862.4E-1090169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTRQKIQIKK IDNLTARQVT FSKRRRGLFK KAKELSILCD AEIALIVFSA TGKLFDYASS  60
SMQQVIEKHN MHLENQDKLS QQSLELELEN NAYNLLSNEI VERTNELRRM RGEELQELNL  120
EDLKQLEKLA EGGLSRVIKI KGERIMKEIH SLKKKETQLL EDNYRLKKMA DTLRVQKDVR  180
QGQSSESIVT DICNSADPLQ DHIDSSDTSL KLGLVDCIQY FTIKLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20177177MEF2C
5f28_B1e-20177177MEF2C
5f28_C1e-20177177MEF2C
5f28_D1e-20177177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893793.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893790.11e-163MADS-box protein JOINTLESS-like
RefseqXP_015893791.11e-163MADS-box protein JOINTLESS-like
RefseqXP_015893792.11e-163MADS-box protein JOINTLESS-like
RefseqXP_015893793.11e-163MADS-box protein JOINTLESS-like
SwissprotQ9FUY61e-77JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A1U7ZZ567e-89A0A1U7ZZ56_NELNU; MADS-box protein SVP isoform X2
STRINGXP_010254524.13e-89(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]