PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893761.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 288aa    MW: 32730.8 Da    PI: 8.4696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005293108116
                     EEETTTTEEESSHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnL 16 
                     +kC++C+ks+s+k+++
  XP_015893761.1  93 FKCKKCNKSYSSKEMY 108
                     89**********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF533354.26E-11139215IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1505.1E-9148211IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0080167Biological Processresponse to karrikin
GO:0010287Cellular Componentplastoglobule
GO:0008168Molecular Functionmethyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MATASFSLRP LHRAFSFLNC PQLDRNSRFH PHLRYPSNGF TSIAIRASST VTLEPETIKN  60
KSAELFACPV CYEPLIRKGP SGLNLEAIYR SGFKCKKCNK SYSSKEMYLD LTVTAGLRNY  120
SEDQPAMTEL FRSPLVSFLY ERGWRQNFRQ RGFPGPDEEF KMAQDYFKSV EGGVLIDISC  180
GSGLFSRKFA KSGTYSGVVA LDFSENMLRQ CYDFIKGDAA LLKRCCIALL AISFQCCKEI  240
SCCDFHLYIS GWQVFQVFHN NQVGTIKILL PKSPVFYEVV EFLLEPLF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893761.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893761.10.0uncharacterized methyltransferase At2g41040, chloroplastic-like isoform X4
SwissprotQ0WPT79e-90Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBLW9RKP51e-113W9RKP5_9ROSA; Putative methyltransferase
STRINGXP_010099510.11e-114(Morus notabilis)
Publications ? help Back to Top
  1. Vidi PA, et al.
    Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles.
    J. Biol. Chem., 2006. 281(16): p. 11225-34
    [PMID:16414959]
  2. Ytterberg AJ,Peltier JB,van Wijk KJ
    Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.
    Plant Physiol., 2006. 140(3): p. 984-97
    [PMID:16461379]
  3. Lundquist PK, et al.
    The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.
    Plant Physiol., 2012. 158(3): p. 1172-92
    [PMID:22274653]