PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015893747.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

C2H2

Protein Properties

Length: 334aa MW: 37709.2 Da PI: 9.643

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015893747.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00062	93	108	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 +kC++C+ks+s+k+++ XP_015893747.1 93 FKCKKCNKSYSSKEMY 108 89**********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53335	5.72E-19	139	279	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	8.9E-18	162	265	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	2.13E-7	175	256	No hit	No description
Pfam	PF08241	3.8E-13	177	264	IPR013216	Methyltransferase type 11

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0080167	Biological Process	response to karrikin
GO:0010287	Cellular Component	plastoglobule
GO:0008168	Molecular Function	methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MATASFSLRP LHRAFSFLNC PQLDRNSRFH PHLRYPSNGF TSIAIRASST VTLEPETIKN 60 KSAELFACPV CYEPLIRKGP SGLNLEAIYR SGFKCKKCNK SYSSKEMYLD LTVTAGLRNY 120 SEDQPAMTEL FRSPLVSFLY ERGWRQNFRQ RGFPGPDEEF KMAQDYFKSV EGGVLIDISC 180 GSGLFSRKFA KSGTYSGVVA LDFSENMLRQ CYDFIKGDAA LLKSNLALVR ADVSRLPFTS 240 GSVDAVHAGA ALHCWPSPSN AVRKFPAVIF IFILVAGKSS KFFTTIKLEQ SKSCCRNHPY 300 FTKWWSFCWN HFSKIYSLYP RNHKATQTED PSGL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015893747.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015893747.1	0.0	uncharacterized methyltransferase At2g41040, chloroplastic-like isoform X2
Swissprot	Q0WPT7	1e-115	Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBL	W9RKP5	1e-143	W9RKP5_9ROSA; Putative methyltransferase
STRING	XP_010099510.1	1e-144	(Morus notabilis)

Publications ? help Back to Top
Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Lundquist PK, et al. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol., 2012. 158(3): p. 1172-92 [PMID:22274653]