PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015893576.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 277aa    MW: 30764.7 Da    PI: 8.4128
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015893576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.73.7e-14199235135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg  +  Tp +Rrgp g+++LCnaCGl+++ kg+
  XP_015893576.1 199 CQHCGIDEkcTPAMRRGPGGPRSLCNACGLMWANKGT 235
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.8E-76297IPR010399Tify domain
PROSITE profilePS5132012.8596297IPR010399Tify domain
PfamPF062001.1E-96796IPR010399Tify domain
PROSITE profilePS5101712.808130172IPR010402CCT domain
PfamPF062031.2E-14130172IPR010402CCT domain
SMARTSM004016.3E-11193246IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-10197245No hitNo description
Gene3DG3DSA:3.30.50.106.6E-13197240IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.36E-12198241No hitNo description
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
PfamPF003203.9E-12199235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEMVNPQPLQ ARPYRNGEDG IQQIPSQVER GGVGGGREEY MNGVEEERAT SSGVTVNRNS  60
VSHSRTGELT IAFEGEVYVF PAVTPEKVQA VLLLLGGRDG LSCVPNPEFM LQQNSKGLGD  120
PSRSSKLSRR IASLVRFREK RKERCFEKKI RYTCRKEVAQ RMHRKNGKFA SVKESCKLDA  180
GNWDSSDSIP CPESTLRRCQ HCGIDEKCTP AMRRGPGGPR SLCNACGLMW ANKGTLRDLT  240
KAGRVTSLDH TEPETPAEIK PSSVEPENSY HEQDELV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015893576.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4326053e-33AM432605.2 Vitis vinifera contig VV78X221945.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893576.10.0GATA transcription factor 28-like
SwissprotQ8H1G04e-59GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2P5FKM11e-136A0A2P5FKM1_TREOI; GATA transcription factor
STRINGXP_008237241.11e-119(Prunus mume)
STRINGEMJ019681e-120(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-52ZIM-like 1