PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015893562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GATA | ||||||||
Protein Properties | Length: 210aa MW: 22468.2 Da PI: 9.8501 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.8 | 2.6e-17 | 117 | 152 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt++ Tp++Rrgp g++tLCnaCGl+++ kg XP_015893562.1 117 CTHCGTSSksTPMMRRGPAGPRTLCNACGLKWANKG 152 ********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 3.9E-17 | 45 | 87 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.473 | 45 | 87 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.737 | 111 | 168 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.5E-11 | 111 | 164 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.66E-12 | 113 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.2E-16 | 116 | 158 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 117 | 144 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.01E-15 | 117 | 166 | No hit | No description |
Pfam | PF00320 | 5.6E-15 | 117 | 152 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSEVQAVLLL LGGYEIPSGI PAVGSVPLNQ RGINEFTGKP IQPQRAASLS RFREKRKERC 60 FDKKIRYSVR KEVALRMQRK KGQFVSSKVS SDEGSPSSVW NATQGSGQDE STQETLCTHC 120 GTSSKSTPMM RRGPAGPRTL CNACGLKWAN KGILRDLSKV SSTGIQDPSA KETEQSDGEA 180 NDSDAVTTTA DIVATNGDNS AMTAAAAAKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015893562.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024933294.1 | 1e-152 | GATA transcription factor 24-like, partial | ||||
Swissprot | Q8GXL7 | 4e-62 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A2I4DVR1 | 1e-116 | A0A2I4DVR1_JUGRE; GATA transcription factor 24-like | ||||
STRING | XP_010112233.1 | 1e-116 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 5e-65 | ZIM-like 1 |
Publications ? help Back to Top | |||
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