PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892705.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 479aa    MW: 50864.7 Da    PI: 8.2494
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-115174427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                      C ++++tG+C yG+rC+++H++
  XP_015892705.1 51 NDCIYYLKTGYCGYGSRCRYNHPR 74
                    68********************96 PP
2zf-CCCH40.44.9e-1396120327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C+++++tGtCkyG++Ck++H++
  XP_015892705.1  96 QPVCQYYMKTGTCKYGASCKYHHPR 120
                     689********************96 PP
3zf-CCCH34.53.3e-11141165226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+++ +tG+Ck+G +CkF+H+
  XP_015892705.1 141 GEKECSYYVKTGQCKFGTTCKFHHP 165
                     7899********************9 PP
4zf-CCCH36.58e-12303328227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C+++++tG CkyG++C+++H+p
  XP_015892705.1 303 GQQECQYYLKTGDCKYGSSCRYHHPP 328
                     6789********************97 PP
5zf-CCCH34.43.6e-11350374327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +lC ++a+ G Ck+G+ CkF H++
  XP_015892705.1 350 APLCTHYAQRGVCKFGPACKFDHPM 374
                     68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2394775IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-65076IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-95174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9293121IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-793120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-794120IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-698120IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6141166IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4145164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.267301329IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6301328IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6304329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5307328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375347375IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6347374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6349378IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8350374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5352375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MERYGRATTE GSQSDPSPEW TAPVADTGLE EPVWQLGVGG EESYPERPNE NDCIYYLKTG  60
YCGYGSRCRY NHPRDRSAVM GAARAGGVEY PERVGQPVCQ YYMKTGTCKY GASCKYHHPR  120
QGGGSISSVT LNYYGYPLRP GEKECSYYVK TGQCKFGTTC KFHHPLQAGV QLPAPSPTPQ  180
VQPVPAPTLY PPVQSPSGSS SQQYGLVVAR PPLIQGPYVQ SPYGTVLIPP GMVQFPSWNP  240
YTASVSPLPS PSTQPTVGSG PIYGITQLSP SASAYTGSYQ PPLPSVGPSS GTQKERLFPE  300
RPGQQECQYY LKTGDCKYGS SCRYHHPPEV IAPKATVVLS PMGLPMRPGA PLCTHYAQRG  360
VCKFGPACKF DHPMESLSYS PSASSLTDMP VAPYPVGSSI GTLAPSSSSS ELRPELTSGS  420
SKDSTSARMS SSMSTTSGSV GSTFSKGGSV SHLSLQQSAQ SSGPSTGSNS SISESHTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892705.10.0zinc finger CCCH domain-containing protein 34 isoform X1
SwissprotQ6NPN31e-167C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLM5XDL40.0M5XDL4_PRUPE; Uncharacterized protein
STRINGEMJ240040.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-158C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]